RNA id: TU153946


Basic Information

Item Value
RNA id TU153946
length 214
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G135390
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 13917358 ~ 13917571 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCACATAGTGGTAAACATGGCCTTGTCCCAACTTTTTTGAGATGTGTTGATGCCATGAAATTTAAAATCAACTTATTTTTCCCTTAAAATGATATATTTTCTCAGTTTAAACATTTGATATGTCATCTATGTTGTATTCTGAATAAAATATTGACATTTGAAACTTCCACATCATTGCATTCCTTTTTTATTCACAATTTGTACAGTGTCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153848 lncRNA upstream 141537 13775388 ~ 13775821 (+) True G135305
TU153838 lncRNA upstream 175653 13741466 ~ 13741705 (+) True G135295
TU153837 lncRNA upstream 176064 13741076 ~ 13741294 (+) True G135294
TU153832 lncRNA upstream 177674 13739467 ~ 13739684 (+) True G135289
TU153825 lncRNA upstream 188516 13728388 ~ 13728842 (+) True G135282
TU153955 lncRNA downstream 47666 13965237 ~ 13965475 (+) True G135399
TU154021 lncRNA downstream 71910 13989481 ~ 13989758 (+) True G135462
TU154127 lncRNA downstream 230601 14148172 ~ 14148377 (+) True G135562
TU154129 lncRNA downstream 235688 14153259 ~ 14153526 (+) True G135564
TU154103 lncRNA downstream 237610 14155181 ~ 14157296 (+) True G135538
CI01000026_13837986_13903960.mRNA mRNA upstream 13096 13837739 ~ 13904262 (+) True CI01000026_13837986_13903960
CI01000026_13705684_13706187.mRNA mRNA upstream 210796 13704984 ~ 13706562 (+) True CI01000026_13705684_13706187
CI01000026_13356327_13411385.mRNA mRNA upstream 505624 13356327 ~ 13411734 (+) True CI01000026_13356327_13411385
CI01000026_13318769_13335447.mRNA mRNA upstream 580833 13318083 ~ 13336525 (+) True CI01000026_13318769_13335447
CI01000026_13218786_13290069.mRNA mRNA upstream 627204 13218786 ~ 13290154 (+) True CI01000026_13218786_13290069
CI01000026_14074647_14076746.mRNA mRNA downstream 156839 14074410 ~ 14077101 (+) True CI01000026_14074647_14076746
CI01000026_14178928_14180619.mRNA mRNA downstream 260679 14178250 ~ 14180732 (+) True CI01000026_14178928_14180619
CI01000026_14205243_14205597.mRNA mRNA downstream 284865 14202436 ~ 14206263 (+) True CI01000026_14205243_14205597
CI01000026_14282383_14282886.mRNA mRNA downstream 364574 14282145 ~ 14283069 (+) True CI01000026_14282383_14282886
CI01000026_14473444_14517944.mRNA mRNA downstream 553986 14471557 ~ 14518132 (+) False CI01000026_14473444_14517944
TU151829 other upstream 2440451 11476117 ~ 11476907 (+) False G133542
TU151777 other upstream 2662285 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 2838278 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 3755397 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 4348198 9568739 ~ 9569160 (+) False G132667

Expression Profile