RNA id: TU159111


Basic Information

Item Value
RNA id TU159111
length 355
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G140011
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3229313 ~ 3231412 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCACATTTTGGGCAAAACCAGAACCACCGAGCTGCAGACGCGCCAAAAGCTTGAAACAGGGCTATACGAAAATATTTTGTGAAGATGAACTTCATAAACAGCGACGTCCGGTACAGACATGTGATTTTAATACAGCGTTTGAGGAGCGTTGTGAATTTTTAGTCTCCTCCACCGGAGTGACACAGACACTGGTAAATCTCTCATCTGTCCTGGTTGTTTGGCCCCTCGTACACAGGAGTTCAGTGGCCCCACACTGGGTTTCAGGGGGTCTAGAGAGAGACGGAGGGCATCCCACTCCTCTCACACCTTTATGTGCATTAGAACCTGTTTACGGTGTGAACTGAAGTCCTCTGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159097 lncRNA downstream 32610 3196470 ~ 3196703 (-) True G139998
TU159072 lncRNA downstream 68906 3160050 ~ 3160407 (-) True G139980
TU159053 lncRNA downstream 69939 3158395 ~ 3159374 (-) False G139967
TU159054 lncRNA downstream 69939 3158395 ~ 3159374 (-) True G139967
TU159063 lncRNA downstream 91300 3137807 ~ 3138013 (-) True G139972
TU159128 lncRNA upstream 21697 3253109 ~ 3253580 (-) True G140025
TU159129 lncRNA upstream 23515 3254927 ~ 3255168 (-) True G140026
TU159062 lncRNA upstream 24712 3256124 ~ 3256513 (-) True G139971
TU159149 lncRNA upstream 74293 3305705 ~ 3336881 (-) True G140038
TU159146 lncRNA upstream 120028 3351440 ~ 3352713 (-) True G140035
CI01000027_03186359_03192441.mRNA mRNA downstream 36872 3186099 ~ 3192441 (-) True CI01000027_03186359_03192441
CI01000027_03117518_03132307.mRNA mRNA downstream 97006 3115633 ~ 3132307 (-) False CI01000027_03117518_03132307
CI01000027_03101390_03106479.mRNA mRNA downstream 122834 3101089 ~ 3106479 (-) True CI01000027_03101390_03106479
CI01000027_03035114_03099542.mRNA mRNA downstream 129771 3035114 ~ 3099542 (-) True CI01000027_03035114_03099542
CI01000027_02989304_02990854.mRNA mRNA downstream 238459 2989289 ~ 2990854 (-) True CI01000027_02989304_02990854
CI01000027_03261114_03264008.mRNA mRNA upstream 29702 3261114 ~ 3264008 (-) True CI01000027_03261114_03264008
CI01000027_03297095_03298505.mRNA mRNA upstream 65620 3297032 ~ 3299512 (-) True CI01000027_03297095_03298505
CI01000027_03301041_03302954.mRNA mRNA upstream 69488 3300900 ~ 3303506 (-) True CI01000027_03301041_03302954
CI01000027_03371533_03388330.mRNA mRNA upstream 139837 3371249 ~ 3389135 (-) True CI01000027_03371533_03388330
CI01000027_03468269_03469904.mRNA mRNA upstream 236452 3467864 ~ 3470215 (-) True CI01000027_03468269_03469904
TU158517 other downstream 1001288 2227919 ~ 2228025 (-) True G139484
TU158538 other downstream 1103285 2125857 ~ 2126028 (-) True G139505
TU158463 other downstream 1909152 1302034 ~ 1320161 (-) True CI01000027_01303308_01319462
TU158436 other downstream 1982336 1246564 ~ 1246977 (-) True G139420
TU158434 other downstream 1982629 1246564 ~ 1246684 (-) False G139420
TU159241 other upstream 270122 3510282 ~ 3584679 (-) False G140118
TU159249 other upstream 270122 3512060 ~ 3584679 (-) True G140118
TU159244 other upstream 277940 3509352 ~ 3584679 (-) True G140118
TU159398 other upstream 555966 3787378 ~ 3789222 (-) True CI01000027_03787377_03788902
TU159388 other upstream 690984 3922396 ~ 3925572 (-) True CI01000027_03922380_03931033

Expression Profile