RNA id: CI01000028_09097962_09100854.mRNA


Basic Information

Item Value
RNA id CI01000028_09097962_09100854.mRNA
length 1002
RNA type mRNA
GC content 0.44
exon number 6
gene id CI01000028_09097962_09100854
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 9097962 ~ 9100854 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAACATTTGAGGGCACACGGAATAAATTTGAAAGCAGAGGGATGCACTGTGTTTGACAGCTTGCGGACATTAGCTGGGACTAGCAGTGTGGACGACCCCAGCCCCAGTCATACCAACCCTAGCAAAAAGGAGTCCACCGATTATGATGATGACAGCAGCCTTTCCGCAGCTAGTAGTACTACAGCAGTGACCCCATTTACCATTGGCAAAGAAGGCTACTTTGACAAAGGAGAAGGCCTCGTGGTGGCAGACGAGATAAATTGCATTCTGGAGGAATTCCAGATAAACACTGAAGTTGTAGCTGCCACAGTAGACAACGCCAGTAATATGGATGTTGCACTGAAGAATCTTAAGCTTTTAAAGAACATGGTGGAACTCCCTTTTCTTGATGGTGGAGAGATTTTTAGAGCAGTACCCGACCATCCAGGCAGCATCACTTTACCAACGACTCAAGAAGCCAATGGAGAAAGAGAACTAATAGACAAGAAGATCAGTTGTGAAACAATGAGTAGCAATAGTTTATTTTTATTCTTATCTTCATATTTTCTTTTTTGCCCCAGACTGGAAAGACTCACAGATGATAACTTCCAGAAAGCAGAGGATTTTGTTAAAATCATGAAGTTGTTGTACACCTCAATCCTCTGTGTATCCAGTGAGAAGTCACCCACATGTGGCCAAATTCTCCTCATACTGACTAAGCTGGAGGCGCATTTCACGGTGACTGTGTATAACAGTGCTTTGAAAGAGAAAGTCTGGGGAGATCTGGAATATCAGGATGAAGACATTAAGAACTTCATCCAGGAGGCCACTTTGATGGACCCTCACTTCAAAGGCAAACCTGGATGTGCTGTTGCAGCTGATGCTTGGGGTTGGTTGGAGAAAGCAGCAGTTTGCAATGTAACAGAACAGCTTCCAGTGGAGGGCGTTCAGTATCACAACATTGAGGAAGATAGATTGGGTGACCATCAGGAGGACAAGTCATTGAAGGCAGAGGAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171044 lncRNA downstream 55165 9042336 ~ 9042797 (-) True G150610
TU170999 lncRNA downstream 133689 8960925 ~ 8964273 (-) True G150568
TU170955 lncRNA downstream 228071 8869616 ~ 8869891 (-) True G150524
TU170783 lncRNA downstream 351042 8746716 ~ 8746920 (-) True G150368
TU170712 lncRNA downstream 439238 8657945 ~ 8658724 (-) False G150315
TU171288 lncRNA upstream 37520 9138374 ~ 9195957 (-) True G150833
TU171322 lncRNA upstream 110363 9211217 ~ 9211476 (-) True G150867
TU171324 lncRNA upstream 111734 9212588 ~ 9212787 (-) True G150869
TU171331 lncRNA upstream 118120 9218974 ~ 9219205 (-) True G150876
TU171332 lncRNA upstream 119563 9220417 ~ 9220626 (-) True G150877
CI01000028_09035121_09057360.mRNA mRNA downstream 39997 9034579 ~ 9057965 (-) True CI01000028_09035121_09057360
CI01000028_09019298_09021471.mRNA mRNA downstream 74872 9017345 ~ 9023090 (-) True CI01000028_09019298_09021471
CI01000028_08879941_08885561.mRNA mRNA downstream 212259 8879841 ~ 8885703 (-) True CI01000028_08879941_08885561
CI01000028_08823968_08838447.mRNA mRNA downstream 258196 8823478 ~ 8839766 (-) True CI01000028_08823968_08838447
CI01000028_08696023_08698981.mRNA mRNA downstream 398779 8695817 ~ 8699183 (-) True CI01000028_08696023_08698981
CI01000028_09159785_09161996.mRNA mRNA upstream 58895 9159749 ~ 9162816 (-) True CI01000028_09159785_09161996
CI01000028_09224491_09231508.mRNA mRNA upstream 122951 9223805 ~ 9231845 (-) True CI01000028_09224491_09231508
CI01000028_09326092_09330464.mRNA mRNA upstream 224993 9325847 ~ 9330507 (-) True CI01000028_09326092_09330464
CI01000028_09331581_09331760.mRNA mRNA upstream 230485 9331339 ~ 9331760 (-) False CI01000028_09331581_09331760
CI01000028_09340262_09347554.mRNA mRNA upstream 239095 9339949 ~ 9347720 (-) True CI01000028_09340262_09347554
TU170727 other downstream 404219 8693398 ~ 8693743 (-) True G150328
TU170278 other downstream 1073718 8011796 ~ 8024244 (-) False G149923
TU170277 other downstream 1085255 7974568 ~ 8012707 (-) False G149923
TU169985 other downstream 1562219 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU171580 other upstream 375991 9476845 ~ 9487121 (-) True CI01000028_09469357_09494746

Expression Profile