RNA id: CI01000028_08879941_08885561.mRNA


Basic Information

Item Value
RNA id CI01000028_08879941_08885561.mRNA
length 635
RNA type mRNA
GC content 0.45
exon number 3
gene id CI01000028_08879941_08885561
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 8879841 ~ 8885703 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCATGTCATGCCTACACAAGTGGATCTGTAATAGCAGTAATTCAGATTTGTTTCACTGATAAACTTGTAGTGGTTTTGTGTGCAGGAATTGTGTGTGTGTTTACCTACAATAAGGATGACTAGCTGTTTGGTACCCAGCAATGACTGCAGTTTGTAATCATCTGCTTTCTCATTTGCTTTCCAGGAGATTTTCACCACAGTCTCTATACAGTTGTGCAGCTGTAATCAAGAACCAGAGAACAGCTGCTTTCCCCAAGGGCCTTCTCCAGACATACCAGCAGATTAGTGCAGTAGGCATTAGTGTGGTGCGCTCGAACCCTTTCCCTGAAATTAAGACACTCAGTTTCAATGTCACAATGCCAGACATGTCTCCGGAGCAGCCAAGGAGCCTGAATCCTCCGGCTAACTCGAACAATGATCTCCAGTGGTCCGAGATATGCACCGTAAACCAGCCGGCATTCCTGGACACAATTACAGAACTGAGCCATATGGGCCTATCTAAAACACCTACACAAAGCAAACAAAAGCCTTGACTGTTCGAAGACAAGGGAACTCTGATCGCTGGCCTTGTCACCCCTGCAATCTCCTCCCTGAGTAGCGTTCAAATCATATTATCATAGTTAACTCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170955 lncRNA downstream 9950 8869616 ~ 8869891 (-) True G150524
TU170783 lncRNA downstream 132921 8746716 ~ 8746920 (-) True G150368
TU170712 lncRNA downstream 221117 8657945 ~ 8658724 (-) False G150315
TU170713 lncRNA downstream 221117 8658077 ~ 8658724 (-) True G150315
TU170715 lncRNA downstream 223226 8654275 ~ 8656615 (-) True G150316
TU170999 lncRNA upstream 75222 8960925 ~ 8964273 (-) True G150568
TU171044 lncRNA upstream 156633 9042336 ~ 9042797 (-) True G150610
TU171288 lncRNA upstream 252671 9138374 ~ 9195957 (-) True G150833
TU171322 lncRNA upstream 325514 9211217 ~ 9211476 (-) True G150867
TU171324 lncRNA upstream 326885 9212588 ~ 9212787 (-) True G150869
CI01000028_08823968_08838447.mRNA mRNA downstream 40075 8823478 ~ 8839766 (-) True CI01000028_08823968_08838447
CI01000028_08696023_08698981.mRNA mRNA downstream 180658 8695817 ~ 8699183 (-) True CI01000028_08696023_08698981
CI01000028_08578132_08578857.mRNA mRNA downstream 299729 8578058 ~ 8580112 (-) True CI01000028_08578132_08578857
CI01000028_08574189_08576449.mRNA mRNA downstream 303392 8574045 ~ 8576449 (-) True CI01000028_08574189_08576449
CI01000028_08523322_08527676.mRNA mRNA downstream 352165 8523193 ~ 8527676 (-) True CI01000028_08523322_08527676
CI01000028_09019298_09021471.mRNA mRNA upstream 131642 9017345 ~ 9023090 (-) True CI01000028_09019298_09021471
CI01000028_09035121_09057360.mRNA mRNA upstream 148876 9034579 ~ 9057965 (-) True CI01000028_09035121_09057360
CI01000028_09097962_09100854.mRNA mRNA upstream 212259 9097962 ~ 9100854 (-) True CI01000028_09097962_09100854
CI01000028_09159785_09161996.mRNA mRNA upstream 274046 9159749 ~ 9162816 (-) True CI01000028_09159785_09161996
CI01000028_09224491_09231508.mRNA mRNA upstream 338102 9223805 ~ 9231845 (-) True CI01000028_09224491_09231508
TU170727 other downstream 186098 8693398 ~ 8693743 (-) True G150328
TU170278 other downstream 855597 8011796 ~ 8024244 (-) False G149923
TU170277 other downstream 867134 7974568 ~ 8012707 (-) False G149923
TU169985 other downstream 1344098 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU171580 other upstream 591142 9476845 ~ 9487121 (-) True CI01000028_09469357_09494746

Expression Profile