RNA id: TU170715


Basic Information

Item Value
RNA id TU170715
length 2341
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G150316
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 8654275 ~ 8656615 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAACAAGGCTGAATTTGGGCTGTCAGTGAAAATTTAATAGACGTCTAACCACAGCCCAAGAATAGACTTGTATAGATGTCATCAAATATACAGCTAATGAATGACTACATGTAATAAACAACAAAATAATGGCTAAAGGATTCTTTTCACTTAAATATAACAGGTTCTCATAAATGGCACTCCAACCAAACAAATTACATATAGAAGGTTTTATTTAGAAAAATAACAATACAAAATGATAAAAAAAATAAATAAAAAATAAAAGAATGAAAATTACATTTTACAAATACAATACAATTAAATATAAACATTTAAAAAAAAAAAAAAAAATGGAACATTTAACAAGCAGCATTCAGTCTTTATGTACCATATATCTGGAACAAACTCCCAGAAAACTGCAGGCCTGTTGCAACTGTTTTTTTTTTTTTTTTTTAATGCAAGACTAAAAACTTTACTGTTTGCCACTGCCTTTTATTAATTGGAATAATAATTAATTTATTACACTGCACTAACTTTTACTCTCCTGTTTTTTCTTGTTTTTATTTTCTATTTAGCTCTTTTAAAGTGTTTTCAAATGTTGTCTTATATTGTCCTTTTATATTGACCTATGTTGCTGTTATGTTTTATGTAAAGCACTTTGAATTGCCTTGTTGTTGAAATGTGCTATACAAAATAAACTTGCCTTGCCATATCAAAAACTCATATTTTCATATCATAATGATCTAAAGATTAAAAGATATATGTGGTTTTCATAACATATAATAATAAGTTGCACAGGTTTCATGTTTACCCCCCTGAATTTAGTTAATTAGAGACTTTAAGGGCACAAGGAAACACTACAGTAGGCCTATACGTGCATGTAGCATGTTAATCTAACCACAACCTGGCTTACGCTGAGTCTGCACTGTTACCCGCTAAAATGTCACGATTCCTACACAATAACAAATAATAAATAATGAACATATGTCAAAACGAAAAACAGAGATACTTACACGACCAAAAGCAGGAAAGAATTTGCTTTAAAGTTTGCTGTTGCTTGCTCTCCGACAGTTGTTTATCGCGAGATCTGGCAACAGTGATCTCAACTAACTTTCAAGTCTCGCATTGCCAGTAGTCATGTCTGAGTAGGGCCACAGTTGCCATCTAGCGGTTGAGAATTGTAATTGTATTTTTATTTAACTTAAAATTAAAGGGGTCATATCATGAAAATCTGACTTTTCCCGTGTTTAAATGCTATAATTGGGTCTCTGGTGCATCTACCAGCACAGAAAATGTGGAAAAAGGACAAACCAGTAACTTGGTAAGCCTTTCTCTGCAAGCACGAGACAAATCGAGCCGTTCTGATTTCGCTCCCCTTGTGACGTAGGAAGGGGATCTTATAATATTACTGCCCCCTGAATCTGTGTTTCCACCCATGGCGCCGCCATTGTTTTCCCAAGAAGCGAGTAACACTTGTCCTGGAGTGCAGCAGCACCAGCTGTCCTGCAGTTTAGATACAACCCTGATCAAACACACTTGAATGTCTTCAGGATTACTAAAGCTACATGAAGGAAGGTGAGTTGTGTCAGAGCAAAACTGCTGCAGGACAGCAGCACTCAAGAATGACCGTCCCTGAGCTCTTGATATGGCTCAGCTATGTAAACATTATCACTGATCTGTTAACGGTTATAATAGCAAACATATAAGTCTCCATAAACTCCCTGGCATCTGAGCCACTAAGGACGCAGTGGTGCAATTTTATTTATGAAGGGAATGTGGTTAGATAAATTCATATAGCAGTATGTGTAAGTCATTAACACTAGAATGCTTCCCACGATCTTCAGTAAAACACAGGATTTGCACATAAATTGATTCTCAAAGATTTTGATTCTCAAAGAATTATTCTCAAAGATTCTCTGTGTTTTACTGACGATCGATCCAATTTCATATATTTATTTTGTTATGTTTGCAAATTGTCTTCCTGAATGTGTTTAGTTAGCATGTTGCTAATGTACTGTTAAATGTGGCTAAAATTACCATTGTTTCTTACTGTATTCAGAGACCAGAGTCATTTCGTTATTTTCATTTTTAACCCAAAAACGCGTGTAGTTTGTATAATTCATGAACGCATCTCCATTCTTATTGATTCTCTCCAACAGTGTGTAGCTTTAGCCACGTTAGCCATGCATTACGCTATCAAAATCATTCAGAATCGAATTTTAGCAAACATCCACAAAATACATGCCATACCTATGTTATATGCTGCATCAAGAATAGTTTGTAATGATCCATTTTGCGAGTTATATTTGCTGTGTTAGCTTCAGTATTATGTATGCCTCAGTGAATTGGAATGAGGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170706 lncRNA downstream 1202 8652662 ~ 8653073 (-) True G150313
TU170700 lncRNA downstream 6987 8647086 ~ 8647288 (-) True G150307
TU170697 lncRNA downstream 16163 8637840 ~ 8638112 (-) True G150304
TU170673 lncRNA downstream 37277 8582553 ~ 8616998 (-) False G150281
TU170674 lncRNA downstream 37277 8597139 ~ 8616998 (-) True G150281
TU170712 lncRNA upstream 1330 8657945 ~ 8658724 (-) False G150315
TU170713 lncRNA upstream 1462 8658077 ~ 8658724 (-) True G150315
TU170783 lncRNA upstream 90101 8746716 ~ 8746920 (-) True G150368
TU170955 lncRNA upstream 213001 8869616 ~ 8869891 (-) True G150524
TU170999 lncRNA upstream 304310 8960925 ~ 8964273 (-) True G150568
CI01000028_08578132_08578857.mRNA mRNA downstream 74163 8578058 ~ 8580112 (-) True CI01000028_08578132_08578857
CI01000028_08574189_08576449.mRNA mRNA downstream 77826 8574045 ~ 8576449 (-) True CI01000028_08574189_08576449
CI01000028_08523322_08527676.mRNA mRNA downstream 126599 8523193 ~ 8527676 (-) True CI01000028_08523322_08527676
CI01000028_08253171_08253926.mRNA mRNA downstream 399814 8252965 ~ 8254461 (-) False CI01000028_08253171_08253926
CI01000028_08209464_08209781.mRNA mRNA downstream 444494 8207732 ~ 8209781 (-) False CI01000028_08209464_08209781
CI01000028_08696023_08698981.mRNA mRNA upstream 39202 8695817 ~ 8699183 (-) True CI01000028_08696023_08698981
CI01000028_08823968_08838447.mRNA mRNA upstream 166863 8823478 ~ 8839766 (-) True CI01000028_08823968_08838447
CI01000028_08879941_08885561.mRNA mRNA upstream 223226 8879841 ~ 8885703 (-) True CI01000028_08879941_08885561
CI01000028_09019298_09021471.mRNA mRNA upstream 360730 9017345 ~ 9023090 (-) True CI01000028_09019298_09021471
CI01000028_09035121_09057360.mRNA mRNA upstream 377964 9034579 ~ 9057965 (-) True CI01000028_09035121_09057360
TU170278 other downstream 630031 8011796 ~ 8024244 (-) False G149923
TU170277 other downstream 641568 7974568 ~ 8012707 (-) False G149923
TU169985 other downstream 1118532 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other downstream 1118532 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631
TU169776 other downstream 1421492 7229791 ~ 7232783 (-) True G149474
TU170727 other upstream 36783 8693398 ~ 8693743 (-) True G150328
TU171580 other upstream 820230 9476845 ~ 9487121 (-) True CI01000028_09469357_09494746

Expression Profile