RNA id: TU170674


Basic Information

Item Value
RNA id TU170674
length 415
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G150281
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 8582553 ~ 8616998 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGGCAGTGGGCAGGTCTGCATATGCCACAGGGAAGAGGAAGACCTCATCAAACACAGGGTTTAAAGTCTTACGATGCACCTTGGTCTGGTGTTTGGTTTTGCGGTCTGGGAGAAGGTAGATTTTTACATATGGGTCAGAGGTTCCAGAAAAGTCCTTGGCAGGGAGGTCTTGGGCTCTGTGGATCTTGACAATGAGCTGCTCCAGGTCACAGTCATATTTCAAAATAAAGTGGAGGCGTCCACAGCTGTCCACACGACTGCTTCGGTTGTCCTCTCCATCTAGGGATCGTTGTTTGTAGAGTTCTGGTTTTAGCTGGCCCAGACTCATGCCAGTCAGAGAGTCCTGCCTCTGGAACTGGGTTACTGTGAAGTCAGGGTTAGACTGGTTCATCTGACGCCGAATTGAACTTTGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170641 lncRNA downstream 128624 8463568 ~ 8468515 (-) False G150253
TU170643 lncRNA downstream 130882 8463568 ~ 8466257 (-) True G150253
TU170621 lncRNA downstream 180130 8416552 ~ 8417009 (-) True G150233
TU170610 lncRNA downstream 192832 8403820 ~ 8404307 (-) True G150223
TU170578 lncRNA downstream 197193 8336690 ~ 8399946 (-) True G150191
TU170697 lncRNA upstream 20842 8637840 ~ 8638112 (-) True G150304
TU170700 lncRNA upstream 30088 8647086 ~ 8647288 (-) True G150307
TU170706 lncRNA upstream 35664 8652662 ~ 8653073 (-) True G150313
TU170715 lncRNA upstream 37277 8654275 ~ 8656615 (-) True G150316
TU170712 lncRNA upstream 40947 8657945 ~ 8658724 (-) False G150315
CI01000028_08578132_08578857.mRNA mRNA downstream 17027 8578058 ~ 8580112 (-) True CI01000028_08578132_08578857
CI01000028_08574189_08576449.mRNA mRNA downstream 20690 8574045 ~ 8576449 (-) True CI01000028_08574189_08576449
CI01000028_08523322_08527676.mRNA mRNA downstream 69463 8523193 ~ 8527676 (-) True CI01000028_08523322_08527676
CI01000028_08253171_08253926.mRNA mRNA downstream 342678 8252965 ~ 8254461 (-) False CI01000028_08253171_08253926
CI01000028_08209464_08209781.mRNA mRNA downstream 387358 8207732 ~ 8209781 (-) False CI01000028_08209464_08209781
CI01000028_08696023_08698981.mRNA mRNA upstream 78819 8695817 ~ 8699183 (-) True CI01000028_08696023_08698981
CI01000028_08823968_08838447.mRNA mRNA upstream 206480 8823478 ~ 8839766 (-) True CI01000028_08823968_08838447
CI01000028_08879941_08885561.mRNA mRNA upstream 262843 8879841 ~ 8885703 (-) True CI01000028_08879941_08885561
CI01000028_09019298_09021471.mRNA mRNA upstream 400347 9017345 ~ 9023090 (-) True CI01000028_09019298_09021471
CI01000028_09035121_09057360.mRNA mRNA upstream 417581 9034579 ~ 9057965 (-) True CI01000028_09035121_09057360
TU170278 other downstream 572895 8011796 ~ 8024244 (-) False G149923
TU170277 other downstream 584432 7974568 ~ 8012707 (-) False G149923
TU169985 other downstream 1061396 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other downstream 1061396 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631
TU169776 other downstream 1364356 7229791 ~ 7232783 (-) True G149474
TU170727 other upstream 76400 8693398 ~ 8693743 (-) True G150328
TU171580 other upstream 859847 9476845 ~ 9487121 (-) True CI01000028_09469357_09494746

Expression Profile