RNA id: TU170621


Basic Information

Item Value
RNA id TU170621
length 372
lncRNA type intronic
GC content 0.47
exon number 2
gene id G150233
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 8416552 ~ 8417009 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTACAGTCAAGTAACCTAATGGTTAGCGAGTCTGACTGGTAACCCAAAGGTTGCTGGTTCGATTCCAGCACCAACATGAAATGACTGAGGTGCCCTTGAGCAAAGCACCTAACCCCCAATCACTCCTCGGGTGCCACAGCTTAATGGCTGCCCACTGCTCCGGGTGTGTATCACAGTTTGCAGTGTGTGTGTGTGTGTGTGTTCACTACTCTGCTCCTAATGTGTGTGCATTAACTTGGATCGGTTAAGTGCAGAGGACAAATTCCGAGTATGGGTTACCATACCATACCCCTTCAGGTGTCTTTTTAACTTTTCACTTTCACATGCTTCACAGCCAGTCAAACAAAGATTTTTCCTTTAGTGCAGCATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170610 lncRNA downstream 12245 8403820 ~ 8404307 (-) True G150223
TU170578 lncRNA downstream 16606 8336690 ~ 8399946 (-) True G150191
TU170567 lncRNA downstream 81939 8319816 ~ 8334613 (-) True G150180
TU170422 lncRNA downstream 162139 8253831 ~ 8254413 (-) True CI01000028_08253171_08253926
TU170418 lncRNA downstream 163302 8252865 ~ 8252912 (-) True G150057
TU170641 lncRNA upstream 46559 8463568 ~ 8468515 (-) False G150253
TU170643 lncRNA upstream 46559 8463568 ~ 8466257 (-) True G150253
TU170673 lncRNA upstream 165544 8582553 ~ 8616998 (-) False G150281
TU170674 lncRNA upstream 180130 8597139 ~ 8616998 (-) True G150281
TU170697 lncRNA upstream 220831 8637840 ~ 8638112 (-) True G150304
CI01000028_08253171_08253926.mRNA mRNA downstream 162091 8252965 ~ 8254461 (-) False CI01000028_08253171_08253926
CI01000028_08209464_08209781.mRNA mRNA downstream 206771 8207732 ~ 8209781 (-) False CI01000028_08209464_08209781
CI01000028_07885954_07890507.mRNA mRNA downstream 526045 7884624 ~ 7890507 (-) True CI01000028_07885954_07890507
CI01000028_07643341_07644823.mRNA mRNA downstream 771136 7642217 ~ 7645416 (-) False CI01000028_07643341_07644823
CI01000028_07632826_07637377.mRNA mRNA downstream 778385 7632607 ~ 7638167 (-) True CI01000028_07632826_07637377
CI01000028_08523322_08527676.mRNA mRNA upstream 106184 8523193 ~ 8527676 (-) True CI01000028_08523322_08527676
CI01000028_08574189_08576449.mRNA mRNA upstream 157036 8574045 ~ 8576449 (-) True CI01000028_08574189_08576449
CI01000028_08578132_08578857.mRNA mRNA upstream 161049 8578058 ~ 8580112 (-) True CI01000028_08578132_08578857
CI01000028_08696023_08698981.mRNA mRNA upstream 278808 8695817 ~ 8699183 (-) True CI01000028_08696023_08698981
CI01000028_08823968_08838447.mRNA mRNA upstream 406469 8823478 ~ 8839766 (-) True CI01000028_08823968_08838447
TU170278 other downstream 392308 8011796 ~ 8024244 (-) False G149923
TU170277 other downstream 403845 7974568 ~ 8012707 (-) False G149923
TU169985 other downstream 880809 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other downstream 880809 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631
TU169776 other downstream 1183769 7229791 ~ 7232783 (-) True G149474
TU170727 other upstream 276389 8693398 ~ 8693743 (-) True G150328
TU171580 other upstream 1059836 9476845 ~ 9487121 (-) True CI01000028_09469357_09494746

Expression Profile