RNA id: TU170673



Basic Information


Item Value
RNA id TU170673
length 1255
lncRNA type antisense_over
GC content 0.51
exon number 4
gene id G150281
representative False

Chromosome Information


Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 8582553 ~ 8616998 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCGGCAGTGGGCAGGTCTGCATATGCCACAGGGAAGAGGAAGACCTCATCAAACACAGGGTTTAAAGTCTTACGATGCACCTTGGTCTGGTGTTTGGTTTTGCGGTCTGGGAGAAGGTAGATTTTTACATATGGGTCAGAGGTTCCAGAAAAGTCCTTGGCAGGGAGGTCTTGGGCTCTGTGGATCTTGACAATGAGCTGCTCCAGGTCACAGTCATATTTCAAAATAAAGTGGAGGCGTCCACAGCTGTCCACACGACTGCTTCGGTTGTCCTCTCCATCTAGGGATCGTTGTTTGTAGAGTTCTGGTTTTAGCTGGCCCAGACTCATGCCAGTCAGAGAGTCCTGCCTCTGGAACTGGGTTACTGTGAAGTCAGGGTTAGACTGGTTCATCTGACGCCGAATTGAACTTTGCCTGACACAGGTCGAGGAGGGATCAGTAATTTGCCTCTGCATGCGTGTGTTGCCATGGACACCATTTTCTTGAGGCTTAGACTCCACCTCCAGTGGAATATCAGGTGAAGTGTGGCTTATTTTGAGGGCTGCCTCAGGCACTGGCACTGCAGGAGGAGATCCTGGAACTGCTGGAGAGACTGGAGTGGGCGGCACTGTTGTCTCTTTCACCACTGAACATCGGGCATTATTCCGGCGGTCGAGGGTGGCGTCCACCTCGGTATAGATGGACTGGGGTTGAAGGGGTGGAGGAGGAGGATGAGGTGGGTCTGGATGTCCCTCCTTGGTGCTTGGAGAGAGGCCTCGTTCGCGCCATGGAATCCAGCACAATTTCCATGAAACAAAGAGAGAGACGCCAAACAGGGCCAAGCCACAAGCAGTCACCACCAGTGACAGCAGGCTAATGGATATGTCTGAGTCCGAATACCTCGGCCTGGCAAGGTCTCGGAAATAATAAATGAAATCCAAACAGTTTTCGTTCTGAACCTCCCCCTTAGAACAAAGATCCGATAAGAGTTCTAGCGCTTTTTGACAAATCTCGTCCTCTCTGTCGACAGGCATTTCCCACCAGCATCCTTCTGGATTGTGGAGCTTCTAAAGCGCAATCCCCTCGCAGAGAAACATCATCTCACTGACTGCATCCCACTCTCGCGGACAAACCGAGCTCTTTTTAACGTGGAAGTCTTTTTGTTATTAGTATTATTGTTAAGATTCCCTTTCAGAATTCACTCGACACGGTGAAGTTCTTGCGTGATGTGAAGCCCAGTCGCGACGCGAGTGGAGTCAGAAAACAAAAGCCACCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU170641 lncRNA downstream 114038 8463568 ~ 8468515 (-) False G150253
TU170643 lncRNA downstream 116296 8463568 ~ 8466257 (-) True G150253
TU170621 lncRNA downstream 165544 8416552 ~ 8417009 (-) True G150233
TU170610 lncRNA downstream 178246 8403820 ~ 8404307 (-) True G150223
TU170578 lncRNA downstream 182607 8336690 ~ 8399946 (-) True G150191
TU170697 lncRNA upstream 20842 8637840 ~ 8638112 (-) True G150304
TU170700 lncRNA upstream 30088 8647086 ~ 8647288 (-) True G150307
TU170706 lncRNA upstream 35664 8652662 ~ 8653073 (-) True G150313
TU170715 lncRNA upstream 37277 8654275 ~ 8656615 (-) True G150316
TU170712 lncRNA upstream 40947 8657945 ~ 8658724 (-) False G150315
CI01000028_08578132_08578857.mRNA mRNA downstream 2441 8578058 ~ 8580112 (-) True CI01000028_08578132_08578857
CI01000028_08574189_08576449.mRNA mRNA downstream 6104 8574045 ~ 8576449 (-) True CI01000028_08574189_08576449
CI01000028_08523322_08527676.mRNA mRNA downstream 54877 8523193 ~ 8527676 (-) True CI01000028_08523322_08527676
CI01000028_08253171_08253926.mRNA mRNA downstream 328092 8252965 ~ 8254461 (-) False CI01000028_08253171_08253926
CI01000028_08209464_08209781.mRNA mRNA downstream 372772 8207732 ~ 8209781 (-) False CI01000028_08209464_08209781
CI01000028_08696023_08698981.mRNA mRNA upstream 78819 8695817 ~ 8699183 (-) True CI01000028_08696023_08698981
CI01000028_08823968_08838447.mRNA mRNA upstream 206480 8823478 ~ 8839766 (-) True CI01000028_08823968_08838447
CI01000028_08879941_08885561.mRNA mRNA upstream 262843 8879841 ~ 8885703 (-) True CI01000028_08879941_08885561
CI01000028_09019298_09021471.mRNA mRNA upstream 400347 9017345 ~ 9023090 (-) True CI01000028_09019298_09021471
CI01000028_09035121_09057360.mRNA mRNA upstream 417581 9034579 ~ 9057965 (-) True CI01000028_09035121_09057360
TU170278 other downstream 558309 8011796 ~ 8024244 (-) False G149923
TU170277 other downstream 569846 7974568 ~ 8012707 (-) False G149923
TU169985 other downstream 1046810 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other downstream 1046810 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631
TU169776 other downstream 1349770 7229791 ~ 7232783 (-) True G149474
TU170727 other upstream 76400 8693398 ~ 8693743 (-) True G150328
TU171580 other upstream 859847 9476845 ~ 9487121 (-) True CI01000028_09469357_09494746

Expression Profile