RNA id: TU169776



Basic Information


Item Value
RNA id TU169776
length 1780
RNA type TUCP
GC content 0.40
exon number 2
gene id G149474
representative True

Chromosome Information


Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 7229791 ~ 7232783 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCTCTCGACTATAATACAGTGCATTTACAAAGTTCACAAAGCTAATATAACCCTGAAATGGATATTTACAAGATGTTCGTCATGCATACTGCATGCATGCGTCGGATAATGAAATGTATGTGATCGTCTGTGTGTGAAAGCTGCTCTAACTCAGCTTGTCTCCTCCTCAAATCAGCAATCTCCTGCTCCAGTCGTCCTTCAGCTTGACTCACTGCAGCCTTTTTCTGATCTCTGATCAGCCGTGTCACCTCAGAGCGGTTTCTCTTAATGGAGCGGATTAACTCTGTAAAGATCCTCTCGCTGTCCTTCACTGCTGCCTGTGCAGAGCGCTGTTAGGACACACATTACAATCAGCATGTGATCCACAATGGGCTTCAGTGGGACTGCAATGTCTTCAGCTCTGGAGGAGAGTCTAAACAGTATGTCTTTTAATCCAATAGCCAACGGTTGTTTTTCTCCTCCCAATACTCACCTTATGACACTCAACAGCCTCTCTCCGCTCCTGAATATCTTTTTCTTGCTCCTGAATTCTCTGCTGGTATTTTATCTGTGTTTCTCTATTGAACACAGAAGAAATAACCATGAAAAAATATTTCATAAAAAAGAAATTACAAAATCATCATGTAAAATGTTGTATAAATATTATATTGGTGGCTTTGCCAGAGGTACGAGACACAAGCAAAACTGATGACCATGTAGATACAAGTCGATTGCAATTGTTGTGTGTGTGGTGTGCAAAAAGTTGTGTCTGTATGCTGTGACTCACCTGTTATTTAAAGGGGACCTATTATGCAAAATTCACTTTTGCATGGTGTTTGGACATAAATATGTGTTGGCAGTATGTGTACACAACCACCCTATAATGGTAAAAATAAATTTTTATCATTTTAAATGATAAAAAAATTATGGGGATTTTTTTTTAATCCCCATAAATCATAAGCAGTGTCTCAGAACAAGCCCTGGCAGTGTGACATCACAAAAGCCACAGGCCCCGCCCACAAATGTTGACAGACACTGACGATTAAACATTGAACCGCCCTGAGCGCATTCACAGCAAGTCCGCCATTGCTGCACTGACAAGAATGTCTCCCAAGCGTTTTAGGTGTTCTGTAGCTGGATGGATTAATCCACACAGCTCTCTCCATTTACTCCCTAAATCTGAGCCACTGAAAACGAGGTGGATTAACTTGGTTTTCCAGGAAAATGCTCCCTCAGTTCTGCCGAAATTCGTTTATGTCTGCGCGAATCATTTCACACCGGACTGCTTAGTGAACGAATATGAATACAAAGGGACAATACAAAACAGAGACAGTGCTAATAATGTGCTACTCAAGGATATACAAGTAAACATTGTTCGTGATCCAGCTTACAGTCTCCAGAGTGATACTGGATACGGCAGTAATGAAGGTGAGAGCACTTTATTACAGTTCATCGGAGTTGATTTACGGATATAAAGTTTACAAGTTTATTAAGCACCATCTGAAAAGGCATAAGGTCTTTATATATTTGTTTACTGTTAGTTGTAATGAGTGTTTCTGTGTAATTCACTGTGTATGTTGATGATAATGCAAGGGAGAGAGAGAGAGAGTTTATGGATAATATTTTATCCATTTTATCTGTATAGTTTTGGCCATCATTCGGATGGTACAACAGGCTTGTAGTAATATAGTGGATAAAAACAAGACAATATAAGTTAGAACCGTAATTTAACTAAACTGTGCCTGTTCTATCTCCATGCAACATGTGTTTGCAGTTTCTGACATTATACAGGTGCTGGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169782 lncRNA downstream 1748 7170936 ~ 7228043 (-) True G149480
TU169919 lncRNA downstream 34240 7195141 ~ 7195551 (-) True G149606
TU169863 lncRNA downstream 113482 7076989 ~ 7116309 (-) True G149554
TU169877 lncRNA downstream 117366 7105656 ~ 7112425 (-) True G149567
TU169839 lncRNA downstream 176327 6992080 ~ 7053464 (-) True G149535
TU169945 lncRNA upstream 20011 7252794 ~ 7253110 (-) True G149632
TU169775 lncRNA upstream 41709 7274492 ~ 7277512 (-) True G149473
TU169950 lncRNA upstream 60809 7293592 ~ 7293796 (-) True G149637
TU169769 lncRNA upstream 92017 7324800 ~ 7326970 (-) True G149467
TU169974 lncRNA upstream 139254 7372037 ~ 7373033 (-) True G149657
CI01000028_07209430_07220674.mRNA mRNA downstream 8990 7208209 ~ 7220801 (-) True CI01000028_07209430_07220674
CI01000028_07189923_07200164.mRNA mRNA downstream 29534 7189276 ~ 7200257 (-) True CI01000028_07189923_07200164
CI01000028_07148224_07150338.mRNA mRNA downstream 79299 7147894 ~ 7150492 (-) True CI01000028_07148224_07150338
CI01000028_07124749_07145384.mRNA mRNA downstream 82682 7122715 ~ 7147109 (-) True CI01000028_07124749_07145384
CI01000028_07102169_07103695.mRNA mRNA downstream 126074 7102127 ~ 7103717 (-) True CI01000028_07102169_07103695
CI01000028_07236259_07242539.mRNA mRNA upstream 3416 7236199 ~ 7242940 (-) True CI01000028_07236259_07242539
CI01000028_07257403_07298334.mRNA mRNA upstream 24394 7257177 ~ 7298334 (-) False CI01000028_07257403_07298334
CI01000028_07328793_07405548.mRNA mRNA upstream 95539 7328322 ~ 7406679 (-) True CI01000028_07328793_07405548
CI01000028_07424181_07428224.mRNA mRNA upstream 191182 7423965 ~ 7428549 (-) True CI01000028_07424181_07428224
CI01000028_07527725_07535631.mRNA mRNA upstream 293367 7526150 ~ 7535631 (-) False CI01000028_07527725_07535631
TU169770 other downstream 257894 6971561 ~ 6971711 (-) True G149468
TU169615 other downstream 528551 6699513 ~ 6701240 (-) True G149329
TU166214 other downstream 4783478 2445722 ~ 2446313 (-) True G146272
TU166174 other downstream 5069753 2147378 ~ 2160038 (-) True G146238
TU166103 other downstream 5118526 2097570 ~ 2111265 (-) True G146190
TU169985 other upstream 293179 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU169984 other upstream 293231 7526014 ~ 7535743 (-) True CI01000028_07527725_07535631
TU170277 other upstream 741785 7974568 ~ 8012707 (-) False G149923
TU170278 other upstream 779013 8011796 ~ 8024244 (-) False G149923
TU170727 other upstream 1460615 8693398 ~ 8693743 (-) True G150328

Expression Profile