Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU166174 |
| length | 7674 |
| RNA type | TUCP |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G146238 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000028 |
| NCBI id | null |
| chromosome length | 9874160 |
| location | 2147378 ~ 2160038 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU166154 | lncRNA | downstream | 17720 | 2128269 ~ 2129658 (-) | False | G146232 |
| TU166150 | lncRNA | downstream | 17720 | 2128800 ~ 2129658 (-) | False | G146232 |
| TU166151 | lncRNA | downstream | 17720 | 2129219 ~ 2129658 (-) | True | G146232 |
| TU166159 | lncRNA | downstream | 18822 | 2128269 ~ 2128556 (-) | False | G146232 |
| TU166157 | lncRNA | downstream | 20126 | 2126114 ~ 2127252 (-) | False | G146232 |
| TU166188 | lncRNA | upstream | 899 | 2160937 ~ 2161304 (-) | True | G146247 |
| TU166192 | lncRNA | upstream | 13613 | 2173651 ~ 2173920 (-) | True | G146251 |
| TU166201 | lncRNA | upstream | 42327 | 2202365 ~ 2226354 (-) | True | G146260 |
| TU166213 | lncRNA | upstream | 59893 | 2219931 ~ 2221017 (-) | True | G146271 |
| TU166203 | lncRNA | upstream | 65003 | 2225041 ~ 2225574 (-) | True | G146261 |
| CI01000028_02036977_02046469.mRNA | mRNA | downstream | 100909 | 2036309 ~ 2046469 (-) | True | CI01000028_02036977_02046469 |
| CI01000028_01770721_01773265.mRNA | mRNA | downstream | 374034 | 1770641 ~ 1773344 (-) | False | CI01000028_01770721_01773265 |
| CI01000028_01707320_01709779.mRNA | mRNA | downstream | 436772 | 1706758 ~ 1710606 (-) | True | CI01000028_01707320_01709779 |
| CI01000028_01582515_01591864.mRNA | mRNA | downstream | 555210 | 1582029 ~ 1592168 (-) | False | CI01000028_01582515_01591864 |
| CI01000028_01403859_01408636.mRNA | mRNA | downstream | 738698 | 1403706 ~ 1408680 (-) | True | CI01000028_01403859_01408636 |
| CI01000028_02187324_02188153.mRNA | mRNA | upstream | 26557 | 2186595 ~ 2188153 (-) | True | CI01000028_02187324_02188153 |
| CI01000028_02190605_02195586.mRNA | mRNA | upstream | 30530 | 2190568 ~ 2195964 (-) | True | CI01000028_02190605_02195586 |
| CI01000028_02308696_02319050.mRNA | mRNA | upstream | 148365 | 2308403 ~ 2319050 (-) | True | CI01000028_02308696_02319050 |
| CI01000028_02327402_02338641.mRNA | mRNA | upstream | 167142 | 2327180 ~ 2338641 (-) | True | CI01000028_02327402_02338641 |
| CI01000028_02349404_02380993.mRNA | mRNA | upstream | 188692 | 2348730 ~ 2381788 (-) | True | CI01000028_02349404_02380993 |
| TU166103 | other | downstream | 36113 | 2097570 ~ 2111265 (-) | True | G146190 |
| TU164620 | other | downstream | 1672032 | 475313 ~ 475346 (-) | True | G144886 |
| TU164584 | other | downstream | 2011502 | 135392 ~ 135876 (-) | False | G144855 |
| TU164582 | other | downstream | 2011521 | 135392 ~ 135857 (-) | False | G144855 |
| TU166214 | other | upstream | 281294 | 2445722 ~ 2446313 (-) | True | G146272 |
| TU169615 | other | upstream | 4539475 | 6699513 ~ 6701240 (-) | True | G149329 |
| TU169770 | other | upstream | 4810719 | 6971561 ~ 6971711 (-) | True | G149468 |
| TU169776 | other | upstream | 5069753 | 7229791 ~ 7232783 (-) | True | G149474 |
| TU169985 | other | upstream | 5365924 | 7525962 ~ 7535743 (-) | False | CI01000028_07527725_07535631 |
