RNA id: TU171324


Basic Information

Item Value
RNA id TU171324
length 200
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G150869
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 9212588 ~ 9212787 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAACAAAAATAACAACTTTATTCAACAATTTCCTCTCTCCGCGTCACTCTCTGATGCTGTTCGTGTGAGCACCACGACACATGCGTGTGATGCTGACGCAGAATCCGGCCAATAATGAGCCGACGTTCTGACATAGAACCTGGAAGTGCTGCACTGTGTTTACTACGTCAACAGTGTCAGAGACTGACATGGAAGAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171322 lncRNA downstream 1112 9211217 ~ 9211476 (-) True G150867
TU171288 lncRNA downstream 16631 9138374 ~ 9195957 (-) True G150833
TU171044 lncRNA downstream 169791 9042336 ~ 9042797 (-) True G150610
TU170999 lncRNA downstream 248315 8960925 ~ 8964273 (-) True G150568
TU170955 lncRNA downstream 342697 8869616 ~ 8869891 (-) True G150524
TU171331 lncRNA upstream 6187 9218974 ~ 9219205 (-) True G150876
TU171332 lncRNA upstream 7630 9220417 ~ 9220626 (-) True G150877
TU171350 lncRNA upstream 21437 9234224 ~ 9234516 (-) True G150885
TU171351 lncRNA upstream 22051 9234838 ~ 9235047 (-) True G150886
TU171359 lncRNA upstream 29351 9242138 ~ 9299716 (-) True G150894
CI01000028_09159785_09161996.mRNA mRNA downstream 49772 9159749 ~ 9162816 (-) True CI01000028_09159785_09161996
CI01000028_09097962_09100854.mRNA mRNA downstream 111734 9097962 ~ 9100854 (-) True CI01000028_09097962_09100854
CI01000028_09035121_09057360.mRNA mRNA downstream 154623 9034579 ~ 9057965 (-) True CI01000028_09035121_09057360
CI01000028_09019298_09021471.mRNA mRNA downstream 189498 9017345 ~ 9023090 (-) True CI01000028_09019298_09021471
CI01000028_08879941_08885561.mRNA mRNA downstream 326885 8879841 ~ 8885703 (-) True CI01000028_08879941_08885561
CI01000028_09224491_09231508.mRNA mRNA upstream 11018 9223805 ~ 9231845 (-) True CI01000028_09224491_09231508
CI01000028_09326092_09330464.mRNA mRNA upstream 113060 9325847 ~ 9330507 (-) True CI01000028_09326092_09330464
CI01000028_09331581_09331760.mRNA mRNA upstream 118552 9331339 ~ 9331760 (-) False CI01000028_09331581_09331760
CI01000028_09340262_09347554.mRNA mRNA upstream 127162 9339949 ~ 9347720 (-) True CI01000028_09340262_09347554
CI01000028_09449656_09453949.mRNA mRNA upstream 236316 9449103 ~ 9453949 (-) True CI01000028_09449656_09453949
TU170727 other downstream 518845 8693398 ~ 8693743 (-) True G150328
TU170278 other downstream 1188344 8011796 ~ 8024244 (-) False G149923
TU170277 other downstream 1199881 7974568 ~ 8012707 (-) False G149923
TU169985 other downstream 1676845 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU171580 other upstream 264058 9476845 ~ 9487121 (-) True CI01000028_09469357_09494746

Expression Profile