RNA id: TU171359


Basic Information

Item Value
RNA id TU171359
length 251
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G150894
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 9242138 ~ 9299716 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGTCTCCATTTGCGTTCTAGATTACGAGTTTCTCTTTTGATAGCGTGAGTAATACTGTTGTACCATGGTACAGTATTTTTCTCTCTAACCTTTTTTAATCTCATCGGTGCAACAGTATCTAATGTACTAGTGAAAGAGGTGCACATACTGCTAGTCATTTCCTCAAGTTCATTTGTGTGTTTAGGTACAATGAGCAGCTGAGACAGATCAGGCAGGTTATTTATGAATTTATCTATAGTTGTCAGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171351 lncRNA downstream 7091 9234838 ~ 9235047 (-) True G150886
TU171350 lncRNA downstream 7622 9234224 ~ 9234516 (-) True G150885
TU171332 lncRNA downstream 21512 9220417 ~ 9220626 (-) True G150877
TU171331 lncRNA downstream 22933 9218974 ~ 9219205 (-) True G150876
TU171324 lncRNA downstream 29351 9212588 ~ 9212787 (-) True G150869
TU171404 lncRNA upstream 4613 9304329 ~ 9304554 (-) True G150937
TU171405 lncRNA upstream 7785 9307501 ~ 9307841 (-) True G150938
TU171410 lncRNA upstream 14132 9313848 ~ 9314658 (-) True G150943
TU171316 lncRNA upstream 32042 9332993 ~ 9333155 (-) True G150861
TU171422 lncRNA upstream 34051 9333767 ~ 9333977 (-) True G150953
CI01000028_09224491_09231508.mRNA mRNA downstream 10293 9223805 ~ 9231845 (-) True CI01000028_09224491_09231508
CI01000028_09159785_09161996.mRNA mRNA downstream 79322 9159749 ~ 9162816 (-) True CI01000028_09159785_09161996
CI01000028_09097962_09100854.mRNA mRNA downstream 141284 9097962 ~ 9100854 (-) True CI01000028_09097962_09100854
CI01000028_09035121_09057360.mRNA mRNA downstream 184173 9034579 ~ 9057965 (-) True CI01000028_09035121_09057360
CI01000028_09019298_09021471.mRNA mRNA downstream 219048 9017345 ~ 9023090 (-) True CI01000028_09019298_09021471
CI01000028_09326092_09330464.mRNA mRNA upstream 26131 9325847 ~ 9330507 (-) True CI01000028_09326092_09330464
CI01000028_09331581_09331760.mRNA mRNA upstream 31623 9331339 ~ 9331760 (-) False CI01000028_09331581_09331760
CI01000028_09340262_09347554.mRNA mRNA upstream 40233 9339949 ~ 9347720 (-) True CI01000028_09340262_09347554
CI01000028_09449656_09453949.mRNA mRNA upstream 149387 9449103 ~ 9453949 (-) True CI01000028_09449656_09453949
CI01000028_09463027_09468717.mRNA mRNA upstream 162658 9462374 ~ 9468717 (-) True CI01000028_09463027_09468717
TU170727 other downstream 548395 8693398 ~ 8693743 (-) True G150328
TU170278 other downstream 1217894 8011796 ~ 8024244 (-) False G149923
TU170277 other downstream 1229431 7974568 ~ 8012707 (-) False G149923
TU169985 other downstream 1706395 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU171580 other upstream 177129 9476845 ~ 9487121 (-) True CI01000028_09469357_09494746

Expression Profile