RNA id: TU171044


Basic Information

Item Value
RNA id TU171044
length 462
lncRNA type intronic
GC content 0.30
exon number 1
gene id G150610
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 9042336 ~ 9042797 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGGCACATTTTAAAAACTTTCCATTTTTATTTGTCATCATCACAACCAACCCGTCTCCCATTTAAAATAAATAACTAAAATGAAATAAAAATATAATAAGAAGAATAATATTAAGAAGAAGTACAATATATGGTGGTTATGGTTGAGGCAATGCATATTCTCAAGCCCATCTGAAGACTTTTCATAAAGATAACACTATCAAAACATTTAAGGTGCATCTGTTGGGACAAATTCTCATATTCTTATTTCTCCTGAAAATGTTTTAGGTTGGAGCTTATACGTATACAACAATCAGCATATATGCTGCTCACTGTAATCATTACCACAATAATGATAGCATTGTTTAAATGTTACTTTCTCACTCTGACTTTGAAAATTGCTTACATTAAATTAGAAAGGTAAGTCTTATCCTTTTAATGATATACAAGTATAATGTTCTACAACCCATTGCCAATACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170999 lncRNA downstream 78063 8960925 ~ 8964273 (-) True G150568
TU170955 lncRNA downstream 172445 8869616 ~ 8869891 (-) True G150524
TU170783 lncRNA downstream 295416 8746716 ~ 8746920 (-) True G150368
TU170712 lncRNA downstream 383612 8657945 ~ 8658724 (-) False G150315
TU170713 lncRNA downstream 383612 8658077 ~ 8658724 (-) True G150315
TU171288 lncRNA upstream 95577 9138374 ~ 9195957 (-) True G150833
TU171322 lncRNA upstream 168420 9211217 ~ 9211476 (-) True G150867
TU171324 lncRNA upstream 169791 9212588 ~ 9212787 (-) True G150869
TU171331 lncRNA upstream 176177 9218974 ~ 9219205 (-) True G150876
TU171332 lncRNA upstream 177620 9220417 ~ 9220626 (-) True G150877
CI01000028_09019298_09021471.mRNA mRNA downstream 19246 9017345 ~ 9023090 (-) True CI01000028_09019298_09021471
CI01000028_08879941_08885561.mRNA mRNA downstream 156633 8879841 ~ 8885703 (-) True CI01000028_08879941_08885561
CI01000028_08823968_08838447.mRNA mRNA downstream 202570 8823478 ~ 8839766 (-) True CI01000028_08823968_08838447
CI01000028_08696023_08698981.mRNA mRNA downstream 343153 8695817 ~ 8699183 (-) True CI01000028_08696023_08698981
CI01000028_08578132_08578857.mRNA mRNA downstream 462224 8578058 ~ 8580112 (-) True CI01000028_08578132_08578857
CI01000028_09097962_09100854.mRNA mRNA upstream 55165 9097962 ~ 9100854 (-) True CI01000028_09097962_09100854
CI01000028_09159785_09161996.mRNA mRNA upstream 116952 9159749 ~ 9162816 (-) True CI01000028_09159785_09161996
CI01000028_09224491_09231508.mRNA mRNA upstream 181008 9223805 ~ 9231845 (-) True CI01000028_09224491_09231508
CI01000028_09326092_09330464.mRNA mRNA upstream 283050 9325847 ~ 9330507 (-) True CI01000028_09326092_09330464
CI01000028_09331581_09331760.mRNA mRNA upstream 288542 9331339 ~ 9331760 (-) False CI01000028_09331581_09331760
TU170727 other downstream 348593 8693398 ~ 8693743 (-) True G150328
TU170278 other downstream 1018092 8011796 ~ 8024244 (-) False G149923
TU170277 other downstream 1029629 7974568 ~ 8012707 (-) False G149923
TU169985 other downstream 1506593 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631
TU171580 other upstream 434048 9476845 ~ 9487121 (-) True CI01000028_09469357_09494746

Expression Profile