RNA id: TU171639


Basic Information

Item Value
RNA id TU171639
length 552
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G151114
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 9511419 ~ 9511970 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACTATTTGAATTTGAATTGTGTAAATTTGAATTATAGACAAGTGTAATTTAATAAAATTGAATATTATGTGGCATTTTACATAGTTCTGAATTTGATTTTTTAAAACTTGAATATTAAACATTTGAAATTGAACACAACTGAAATGTTTTCATGGCAGAATTTTATAGACATGTATTTTCAAACAGCAGATTTTTCGTTTTGAAATTTTAGACTGCAAATATCCAGTTTTTAAAAATACAGCTTCAAGTTTTCAAAATGAAGAAGAAATTCAGAACATCAAATTCAATATTGTAAATTCAAAGCGCAGAAATTCAGATCGTACAGAAAGTAGGTCAGAGGCCATCCGCAGGGAAGAGTAGAGGGTCTCAGAAAAGTCGAACGGAGCATTTCGGCCAATTACAGAGCTGCAGTTGTTTTTCTGAGGCGAGTCTGTGCTTAAACATTTATGAGCTGTATTTATATGTTAGGTTGGCTTTTTCAACACTTGAAACATTTGTCTAAGTTTTCTATTGTTTGTTTTAAAGTATATTTGGTGTGAAAGTGATTAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171629 lncRNA downstream 73393 9437321 ~ 9438026 (-) True G151104
TU171569 lncRNA downstream 91837 9413247 ~ 9419582 (-) False G151070
TU171571 lncRNA downstream 91896 9413198 ~ 9419523 (-) False G151070
TU171828 lncRNA upstream 291302 9803272 ~ 9803734 (-) True G151288
TU171831 lncRNA upstream 294855 9806825 ~ 9807053 (-) True G151291
TU171832 lncRNA upstream 295180 9807150 ~ 9807460 (-) True G151292
TU171835 lncRNA upstream 299149 9811119 ~ 9812645 (-) False G151295
TU171836 lncRNA upstream 299149 9811119 ~ 9819353 (-) True G151295
CI01000028_09469357_09494746.mRNA mRNA downstream 16673 9469343 ~ 9494746 (-) False CI01000028_09469357_09494746
CI01000028_09463027_09468717.mRNA mRNA downstream 42702 9462374 ~ 9468717 (-) True CI01000028_09463027_09468717
CI01000028_09449656_09453949.mRNA mRNA downstream 57470 9449103 ~ 9453949 (-) True CI01000028_09449656_09453949
CI01000028_09340262_09347554.mRNA mRNA downstream 163699 9339949 ~ 9347720 (-) True CI01000028_09340262_09347554
CI01000028_09331581_09331760.mRNA mRNA downstream 179659 9331339 ~ 9331760 (-) False CI01000028_09331581_09331760
CI01000028_09620918_09652565.mRNA mRNA upstream 107856 9619826 ~ 9652660 (-) True CI01000028_09620918_09652565
CI01000028_09686064_09687018.mRNA mRNA upstream 173928 9685898 ~ 9687020 (-) True CI01000028_09686064_09687018
CI01000028_09731014_09732318.mRNA mRNA upstream 218938 9730908 ~ 9732555 (-) True CI01000028_09731014_09732318
CI01000028_09754780_09768698.mRNA mRNA upstream 242810 9754780 ~ 9768698 (-) True CI01000028_09754780_09768698
CI01000028_09771470_09791854.mRNA mRNA upstream 259000 9770970 ~ 9791962 (-) True CI01000028_09771470_09791854
TU171580 other downstream 24298 9476845 ~ 9487121 (-) True CI01000028_09469357_09494746
TU170727 other downstream 817676 8693398 ~ 8693743 (-) True G150328
TU170278 other downstream 1487175 8011796 ~ 8024244 (-) False G149923
TU170277 other downstream 1498712 7974568 ~ 8012707 (-) False G149923
TU169985 other downstream 1975676 7525962 ~ 7535743 (-) False CI01000028_07527725_07535631

Expression Profile