RNA id: CI01000029_06410464_06420256.mRNA


Basic Information

Item Value
RNA id CI01000029_06410464_06420256.mRNA
length 2048
RNA type mRNA
GC content 0.49
exon number 8
gene id CI01000029_06410464_06420256
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6410022 ~ 6420256 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCTCATCTTCGATTCAACAATCTCACTCTCATCTCCACTCATGGGCTTCCAGATCGCTGCTCTGATGATAACATGAGATTTCTGGCTACAAGTCACTGCTTCAGCGATCAGGATCAAGCCCAGCTGTCTTTGCGCTCCTGGATCAGTGTGGTGACGGGTAAGATGAAGGCCATCAACCGCGAGGTCAAACACGTGGAGCTGATGGCGAATGGTAAAGTGAACTATGACTATCTGATCCTCTGCACCGGCCTGCAGTATCAGATGCCCAGTCTCACCAGTATGGACGTCATTAACCAGACCACCAGCAATCTACATCAGGCCAGACACAGATCCACATGGCCCGTTTCATCCAACCTCTTCACCCTCAATGACCAGCATGACTGCTCAAACGTCCATCAGTGGCTCATGGACAACTTCGTGGAACTGACAGGCGATGCTGTGGTATATGGAAACACCATAGACGTGTACACCTGTGTGGAGACGCTTATGCGTCTTGGTGTCTGCGGCTGCCGGATTCATGTAGTACATCCTCCCAAAGATGACCCATCTTCCTGTTTCCATGATGGCTCGGTGGATCACGCAGTGAAACAGGCTCTGGAAAAGGAGGAAGTCCAAATCCATCATGACTGCCTTTTGAAGCAACTCAATGATGGACAACACACAGATCCGGTGACATCGGTGTCCTTCACCACTGACGGTCCGACCCTACGACTGGAGTGTGCGGTGTTCTTCAGCTTCTCTTGTAAAACCGTCGACTGCGACGCCTTCAAGGCCATCAATGATGCCTGTTTAGTGTTCGATGGCCGTTTGGTGGTAGATACCACCTTCCATACCAACGACCCCTCCATATACGCCGCTGGCCCTTTGACCAAATACTCCCGCCGTTACCATGCTGACCAGTGGAGCGATTCCTGCTTTAATTCTAAGGAGGTGGGGCAGAGTTTGGCATCTGTTCTCTTGCCCTTATGTGACCCGACCCTGGAGCGTCCCGCCGGCCCACCGTCTGACCAGGAGCACCTCATTCCACTCTACAGTCAGGCCAAGATCCAAGGTCACTATTCTCCTTCCGAATTTCTGAATCACAAGGCCAGTACATCAGTGCAGGGTCGTGACATGGTGACGGGCCGCACTGAAACGGGGAACTACTTTCATCTGCATCTCAGCCAGCATGATGTGGTGGAGAGCATCACGTGCCTCTCGAAGAATGCACTTCCCGTCTCCAACCTCCTGCGTCTCTACAGGAAACACCAGCTGCTGCTGAATCATCTCTGCTCACGCTACCATGAGGGTTTGGTCCATGACATGTACAGTTATTTTAGAGAGAATTGGTGCTTGGCTCTTTATCACGACCGCTTTGCTGACTTTGAACAGGAGGTGCGCCAAATCATGGACTCGGCCAAACTAGAGGGTGAGAGTGGTTCGGTGTCAATTCAAGAGGCTCTTCAGAAGATAGTGGACGATAAAGCAGAGTCCGATCAGCCGACGAGTCTCAGCGAGGTGTTTCAGAAAAGCGAGGCTTATTCTGCTCTGAGAAAGAGTGTTCTGGATTATCTGAAGTACAACAGATACCATCTGACTATGTACGCCCGGCCGGGACTGCTGTAATCAATATCCATTTACATTTAGGAGCATTTATTCACTACTTCATCTTTTGTTTCTTTATTTCTTTACATTTGCTGCACCATATGTCACATTGTGGGGGGTGGGGGCCAAAGAACTTGAGCAAATAATTACAGCTTCTTGTTTTGTCAAATGCAAATGTTTGGTGTGTACTGAGTGACAATTCATTAACAATATCTGACTTTGCTCTTTCGAATAGTCTGTGTATGTGTTATCCAGTATTGGGTTGTATATTATGCTGAGATCTGAAGGCAGTGCGGCGGGGCAGATAAGAGCAGCAGAACGAGGGTGAAGACGGAGCGCAGCAGCAGCTGTATGATAATGAATGTGGGGCAGAAAATCACAGACGCATGATCCAACAGTCACACGTCGTACAGCTCATGTATGGGTAGATCAGATGTTAAACATAACAACAAATGAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177449 lncRNA downstream 25013 6384761 ~ 6385009 (-) True G156285
TU177427 lncRNA downstream 139902 6269919 ~ 6270120 (-) True G156266
TU177407 lncRNA downstream 332390 6076162 ~ 6077632 (-) True G156249
TU177376 lncRNA downstream 439807 5969997 ~ 5970215 (-) True G156222
TU177373 lncRNA downstream 452826 5956866 ~ 5957196 (-) True G156219
TU177516 lncRNA upstream 118267 6538523 ~ 6539321 (-) True G156345
TU177528 lncRNA upstream 155471 6575727 ~ 6575986 (-) True G156357
TU177529 lncRNA upstream 157645 6577901 ~ 6578184 (-) True G156358
TU177530 lncRNA upstream 158005 6578261 ~ 6578493 (-) True G156359
TU177533 lncRNA upstream 176233 6596489 ~ 6596700 (-) True G156362
CI01000029_06406402_06408397.mRNA mRNA downstream 1625 6406069 ~ 6408397 (-) True CI01000029_06406402_06408397
CI01000029_06320111_06340400.mRNA mRNA downstream 69622 6320105 ~ 6340400 (-) True CI01000029_06320111_06340400
CI01000029_06283570_06287370.mRNA mRNA downstream 121755 6283379 ~ 6288267 (-) True CI01000029_06283570_06287370
CI01000029_06238355_06240993.mRNA mRNA downstream 169029 6238184 ~ 6240993 (-) True CI01000029_06238355_06240993
CI01000029_06166033_06201616.mRNA mRNA downstream 208406 6165961 ~ 6201616 (-) True CI01000029_06166033_06201616
CI01000029_06431763_06439215.mRNA mRNA upstream 11464 6431720 ~ 6439215 (-) True CI01000029_06431763_06439215
CI01000029_06449255_06451786.mRNA mRNA upstream 28856 6449112 ~ 6451786 (-) True CI01000029_06449255_06451786
CI01000029_06486658_06492567.mRNA mRNA upstream 66214 6486470 ~ 6492567 (-) True CI01000029_06486658_06492567
CI01000029_06606850_06665941.mRNA mRNA upstream 186594 6606850 ~ 6666150 (-) True CI01000029_06606850_06665941
CI01000029_06666877_06679215.mRNA mRNA upstream 246574 6666830 ~ 6679215 (-) True CI01000029_06666877_06679215
TU175317 other downstream 1422597 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 1422597 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 1932810 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 2702770 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 3123468 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 750111 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 946071 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 946071 7366327 ~ 7369547 (-) False G156495

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036227 True 1775 mRNA 0.50 9 NC_007131.7 48488954 ~ 48516765 (-)