RNA id: TU177492


Basic Information

Item Value
RNA id TU177492
length 372
lncRNA type read_through
GC content 0.36
exon number 2
gene id G156323
representative False

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6786413 ~ 6833696 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCCAAAGCCCTCTAACCCTTCCTGCTAACGCTGCTGTGCTAATAATACACAGAGGAAACTAGCAGAAGGCATCATGGTGAACTTCGCAGCAGCGATTCGTGAGCACTGGGTCAACATTCTGGTCCCTCTGGGTTTCGTCATCGGGGTTTATCTGGACCGACGGAATGATCAGAAACTCACAGCATTCAGGAACAAGAGTGTTTTATACAGCAGGGAACTGAAGCCAGGCGAGCAGTACACCTGGAAGTGAGACTCCTGCAGTGATATTTATTGGACCCTCTGCCCAGAATGTGTATATTGTCTGTTCAGCCACCATGTCTCTGATTTCAAGCATGTTGGTGCAATAAATGTTGCATTTAGTTCTGTAATAAAAAAAAAAAAAAAAAAAGAAAAAAATATATATATTCTCACACAAATAACAAATAATTAACATTTTTAATTGTTTTAAATTTGAATTTGTACTTTTTCACGTGTTATAAATAATTTGAAAACTTTTTTTTACTGTTATTTACTTTACTGGTATTTTATTACTGTTTATTATTGATATGTGTTATTTATTTGTAATTTACAATACTCAAATGTACCTTTGTTGGTTTTTTTCAGTGGTTTTCACTTTCATAGAGTGCATATCGTGACAGATATCATCATCAACCAAAACTTTGAGAATATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177551 lncRNA downstream 25099 6761064 ~ 6761314 (-) True G156380
TU177497 lncRNA downstream 45358 6738533 ~ 6741055 (-) True CI01000029_06739098_06769987
TU177503 lncRNA downstream 97363 6688752 ~ 6689050 (-) True G156332
TU177486 lncRNA downstream 98779 6682691 ~ 6687634 (-) False G156322
TU177569 lncRNA upstream 18428 6852124 ~ 6852324 (-) True G156396
TU177576 lncRNA upstream 27258 6860954 ~ 6861244 (-) True G156400
TU177577 lncRNA upstream 27735 6861431 ~ 6861757 (-) True G156401
TU177586 lncRNA upstream 48891 6882587 ~ 6886699 (-) True G156410
TU177592 lncRNA upstream 59518 6893214 ~ 6902216 (-) True G156416
CI01000029_06739098_06769987.mRNA mRNA downstream 16426 6738714 ~ 6769987 (-) False CI01000029_06739098_06769987
CI01000029_06719634_06722376.mRNA mRNA downstream 63241 6719527 ~ 6723172 (-) True CI01000029_06719634_06722376
CI01000029_06689615_06698873.mRNA mRNA downstream 87540 6689537 ~ 6698873 (-) True CI01000029_06689615_06698873
CI01000029_06666877_06679215.mRNA mRNA downstream 107198 6666830 ~ 6679215 (-) True CI01000029_06666877_06679215
CI01000029_06606850_06665941.mRNA mRNA downstream 120263 6606850 ~ 6666150 (-) True CI01000029_06606850_06665941
CI01000029_06921800_06922750.mRNA mRNA upstream 87585 6921281 ~ 6923115 (-) True CI01000029_06921800_06922750
CI01000029_07332828_07336542.mRNA mRNA upstream 498599 7332295 ~ 7336542 (-) True CI01000029_07332828_07336542
CI01000029_07346183_07362585.mRNA mRNA upstream 512369 7346065 ~ 7362585 (-) True CI01000029_07346183_07362585
CI01000029_07388885_07402311.mRNA mRNA upstream 554548 7388244 ~ 7402678 (-) True CI01000029_07388885_07402311
CI01000029_07405933_07416452.mRNA mRNA upstream 571847 7405543 ~ 7416952 (-) True CI01000029_07405933_07416452
TU175317 other downstream 1798988 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 1798988 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 2309201 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 3079161 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 3499859 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 336671 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 532631 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 532631 7366327 ~ 7369547 (-) False G156495

Expression Profile