RNA id: CI01000029_08156225_08174249.mRNA


Basic Information

Item Value
RNA id CI01000029_08156225_08174249.mRNA
length 2998
RNA type mRNA
GC content 0.52
exon number 10
gene id CI01000029_08156225_08174249
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8155914 ~ 8175136 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATTTAAGGATGGATACACGGGCCACACCTGTGCGCCAGCTGCGTAACCCGCGGACCTGTTGGAGACCACCGGGCACAGACTCACAGCTCTGGGCAGCAGACAGCCCAGCGATGGCGCTGTGACCACCGGGTTCGACAAAGACCTTATGGGGCCCTTTGCGCATCAACGCGCCCGCTGGATTATCATAGTTCCTGGATTCTGTTCGGACCGGCCTTATACTGACTGGACCGAACCTTCCGCCTTCTCTCAGTGTGTGTGAGTGTGATTTTGAGACAAAGACCGTGCGCGCACCGCTGAAACCCACGCGCTATGGATGCGGTTCGGCTGGACGGGCTCGACCCACCGGCGGAGAACGGCAATGTGTCGCAGCCCGAACCGCCCAAGCGGCTCTCGCAGGTGGACACGGTGGTTCTGCCCTTCCTCGGGGGGTTCGGGAGGTATCAGCGGCGCCTGGTGGCCCTGACTTGGATCCCGGCGTTCCTCATCTCGTTCATCCAGTTTTCGGATCACTTTCTGCTCGGCCAGCCGGACAGGAAGTGCGTCCGCCCGGATCAGGGCAGCGCGGGGAACGGGACGGGCTCGGATCGGGATTTATTCTTGGATCTGATCGCGAACGGGAGCGACGCCACCGAGAACAGCTACGTTACGGCGTGTATGTGCTCGGAGTGGCGCTTTGAGCTGCAGTCGGGACTGCAGCAGAATGTGGTCACCAAGTGGACGCTGGTGTGTGACGGAGAGTGGAAGGTTCACATCGCCAAGTTCTCTCTGCTGGTCGGCTCCATTTTTGGCTACCTGCTGATGGGAGCGATGGCAGACTGGTTGGGCCGTATCCCAGTGCTGCTGGTGTCCGTGCTGTCCGTGCTGGTGTTCGGGTTAGCCGTGGCGTTTTCCGTGGATATGGCCATGTTCAGCACACTGCGCTTCTTTGAAGGTTTCTGTCTGGCGGCCATCAGACTGTCCCTTTATGTCCTGAGGATTGAGTTGTGTTTGCCCAAATGGCGTTTCTCCATGACCATGATCGCCAGTCTGATCATCGTGGGCGGGCAGCTGCTGATGCCCGGTTTGGCGGCGCTGTGCCGTGATTGGCAGATTCTTCAGATCGCGATCATCGCTCCTTTTGTGCTTATGCTGCCGTATGTCTGGATGTTTCCCGAGTCTCTGCGCTGGTTGTTGGCCACTCAACATTACCAAAGAGCCAAGCGACAAATGTACCGAATCGCCCAGAGCAACAGCGTCGACACAGCAACCGACCCCAGTGGCATCCTCTCAGAGCTGGAGACGGAACTGCAGCAGAAGCCAAAGACGTCCTGCGTAACGCAGCTGACCGGCACCCGAAACCTGTGGAAGAACACCGTGGTCCTGTGCGTGAACTCGTTGACGGGCTACGGCATCCATCACTGTTTTGCTCGCAGTGTTCTGGAAGGCAGCGAATCTCATCTGAATTACTACGCAGTGGCTGCCATCGCATTCGCCTCCTGTATTGTGGTGTGTCCTGTGGTGGGCGGCTTTGGCAGGAGAGGAGGCCTGCTTACCTTCATGATCATTACAGCCTTGGCATCGCTGCTGCAGCTGGGTCTGCTCAACCTAATCGGGAAGTACAGTCTTCGGCACGATGCAGTTCTGCGAGACACCCTGAATCGGCGCTTCTCGTACGCGTTCTCCATCATCGGGATGTTCTCGTCTCATGCTGTCAGCACACTCAGCATCTTTTACTGCGCAGAGATCACGCCGACTGTCATCAGGGGTGGCGGCGTCGGTCTGGTCCTCGCGAGCGCAGGGTTCGGCATGTTAACAGCGCCTCTCATGGAGCTCCACAATCAGAAGGGTTTCTTCCTGCATCACGTGATCCTCACCTGCTGCACGCTGCTCTGCATCATTTGCATACCGTTGCTCCCGGAGACCGCCGGCCAACCGCTGCCCGAGACTATTGCTGAGGGGGAGGGGCTACTGCGGCAGCCCATCCTCCCTGGAGAGCAGCACCACCTCCTGGCCAGGACCGAGGTCAGGGAATACTCACGCGTTCAGGACACGCCCCTTCACCAGGTCGTGAACCCCGGCAACGGCTCAGTGCCTAGCAACAGTACAGCCAATGGCGTGAGGACTTCATGACAGCATTTTCTAAGATCGGCCAATTGAAGAACAGTGGGAACGATAAGTTTCGATTGTAAAGAACGAGCCTCATTCATTCGTTTTTAAAACCGCGGACTGAGACAGATGTCCCGATAAAAGTGTCAAACGCCTCATTAACCAGCATCGGTGAAGATTATTACCATTGTAGGAACTGAAAATGTTATTTTAACTTGCATTCAATGAAAGGAGTTCTATTTTTCGAACGGCCACTAATTTAATGTCTCCGAACAACAACCTCATGGAGGAGTTTCACTGATTTGAATGTGTTTTTTGTATGTTTGGTAAATGTTTGGTATTTATTAAGGACAGAATGACGACAGTAAGAACCGACGGGCCTCGTTCACGACACGAGTGAAGCAAATTTAAGTAGTTGTAATGCTTTCCATTCGTAGGAATGGTGGTCAAGCGCGACAGAAATGAGTTTTGCTCACGTTTCGTGAATGAAGCGCGTCGTGTTCGTGTGCACCTCACTATGTTCAGGTTTTTTTAGTCTGTCTGTTTTGCACTAAAACTAGAAAAGCAATCATGAGTCGGCCAGATGAATCTGAACTGAATGTGAATGAAACCACAACTAGACAGATGATGGCTGTTTAAAAAAATACAACAGCACAACTTAATGGTCTGCTCTTAACATGCAAACATTCACAAACTCAATAACCTTCATCTGGTGAAACCTGTCAGGAAAGTGTCACGGGTCATATCGCACAACAAAATCAATAGAAATACATTAAAGACAAGAAAAAAATTGGTGTACTTTTAAGAACATTAAGATTTTTCATTACTTCAATGATATTGTACTGGCTTTTGCTAAGTAAAAACATAAATGTATTAAAGTAATGAGAATTTAATGACAATCATCAAGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176779 lncRNA upstream 996 8154717 ~ 8154918 (+) True G155698
TU176753 lncRNA upstream 27949 8124776 ~ 8127965 (+) True G155672
TU176772 lncRNA upstream 57318 8098338 ~ 8098596 (+) True G155691
TU176770 lncRNA upstream 59813 8095823 ~ 8096101 (+) True G155689
TU176746 lncRNA upstream 63660 8084186 ~ 8092254 (+) True G155665
TU176796 lncRNA downstream 39223 8214359 ~ 8226558 (+) True G155713
TU176820 lncRNA downstream 52000 8227136 ~ 8227451 (+) True G155731
TU176802 lncRNA downstream 53780 8228916 ~ 8231327 (+) False G155718
TU176804 lncRNA downstream 53780 8228916 ~ 8231327 (+) True G155718
TU176799 lncRNA downstream 61065 8236201 ~ 8237301 (+) True G155716
CI01000029_08140259_08140582.mRNA mRNA upstream 14969 8140175 ~ 8140945 (+) True CI01000029_08140259_08140582
CI01000029_08072926_08079001.mRNA mRNA upstream 76802 8072926 ~ 8079112 (+) True CI01000029_08072926_08079001
CI01000029_08053844_08058278.mRNA mRNA upstream 97393 8053844 ~ 8058521 (+) True CI01000029_08053844_08058278
CI01000029_08019292_08036434.mRNA mRNA upstream 119156 8019292 ~ 8036758 (+) True CI01000029_08019292_08036434
CI01000029_08007965_08016092.mRNA mRNA upstream 139765 8007055 ~ 8016149 (+) True CI01000029_08007965_08016092
CI01000029_08198433_08203489.mRNA mRNA downstream 23229 8198365 ~ 8203538 (+) True CI01000029_08198433_08203489
CI01000029_08288440_08301175.mRNA mRNA downstream 113304 8288440 ~ 8301357 (+) True CI01000029_08288440_08301175
CI01000029_08318488_08338631.mRNA mRNA downstream 143352 8318488 ~ 8339359 (+) True CI01000029_08318488_08338631
CI01000029_08346604_08357224.mRNA mRNA downstream 171265 8346401 ~ 8357633 (+) True CI01000029_08346604_08357224
CI01000029_08367350_08368348.mRNA mRNA downstream 191208 8366344 ~ 8368514 (+) True CI01000029_08367350_08368348
TU176707 other upstream 223737 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 518080 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 1248482 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 1665620 6431535 ~ 6490294 (+) False G155083
TU177125 other downstream 789682 8964818 ~ 9064541 (+) False G156007

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036436 True 1493 lncRNA 0.55 3 NC_007131.7 53135436 ~ 53152423 (+)