Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU176104 |
| length | 853 |
| lncRNA type | antisense_over |
| GC content | 0.51 |
| exon number | 10 |
| gene id | G155087 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000029 |
| NCBI id | null |
| chromosome length | 9486966 |
| location | 6323091 ~ 6334951 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU176081 | lncRNA | upstream | 60617 | 6262175 ~ 6262474 (+) | True | G155072 |
| TU176069 | lncRNA | upstream | 76448 | 6246338 ~ 6246643 (+) | True | G155061 |
| TU176066 | lncRNA | upstream | 77116 | 6245683 ~ 6245975 (+) | True | G155060 |
| TU176047 | lncRNA | upstream | 159174 | 6163680 ~ 6163917 (+) | True | G155041 |
| TU176038 | lncRNA | upstream | 159699 | 6162651 ~ 6163392 (+) | True | G155032 |
| TU176129 | lncRNA | downstream | 7597 | 6342548 ~ 6342771 (+) | True | G155110 |
| TU176144 | lncRNA | downstream | 46516 | 6381467 ~ 6381786 (+) | True | G155121 |
| TU176147 | lncRNA | downstream | 49813 | 6384764 ~ 6385040 (+) | True | G155124 |
| TU176152 | lncRNA | downstream | 56825 | 6391776 ~ 6391993 (+) | True | G155128 |
| TU176166 | lncRNA | downstream | 96997 | 6431948 ~ 6432805 (+) | True | G155142 |
| CI01000029_06305668_06307332.mRNA | mRNA | upstream | 15416 | 6305245 ~ 6307675 (+) | True | CI01000029_06305668_06307332 |
| CI01000029_06294088_06295613.mRNA | mRNA | upstream | 27065 | 6293019 ~ 6296026 (+) | True | CI01000029_06294088_06295613 |
| CI01000029_06214396_06222690.mRNA | mRNA | upstream | 100356 | 6212878 ~ 6222735 (+) | True | CI01000029_06214396_06222690 |
| CI01000029_06086495_06092753.mRNA | mRNA | upstream | 229232 | 6086495 ~ 6093859 (+) | True | CI01000029_06086495_06092753 |
| CI01000029_06076254_06083211.mRNA | mRNA | upstream | 238880 | 6076121 ~ 6084211 (+) | True | CI01000029_06076254_06083211 |
| CI01000029_06347167_06348123.mRNA | mRNA | downstream | 11709 | 6346660 ~ 6348169 (+) | True | CI01000029_06347167_06348123 |
| CI01000029_06443365_06447942.mRNA | mRNA | downstream | 108414 | 6443365 ~ 6447942 (+) | True | CI01000029_06443365_06447942 |
| CI01000029_06453008_06476863.mRNA | mRNA | downstream | 118057 | 6453008 ~ 6477090 (+) | True | CI01000029_06453008_06476863 |
| CI01000029_06494856_06495812.mRNA | mRNA | downstream | 159440 | 6494391 ~ 6495847 (+) | True | CI01000029_06494856_06495812 |
| CI01000029_06724205_06734079.mRNA | mRNA | downstream | 389254 | 6724205 ~ 6735582 (+) | True | CI01000029_06724205_06734079 |
| TU176089 | other | upstream | 34693 | 6282685 ~ 6288398 (+) | True | G155079 |
| TU175455 | other | upstream | 852745 | 5457241 ~ 5457472 (+) | True | G154531 |
| TU175511 | other | upstream | 1051556 | 5271020 ~ 5271535 (+) | True | G154587 |
| TU174646 | other | upstream | 1582984 | 4733589 ~ 4740107 (+) | True | G153790 |
| TU174291 | other | upstream | 2761087 | 3545125 ~ 3562004 (+) | True | G153475 |
| TU176095 | other | downstream | 96584 | 6431535 ~ 6490294 (+) | False | G155083 |
| TU176099 | other | downstream | 96584 | 6431535 ~ 6490294 (+) | True | G155083 |
| TU176307 | other | downstream | 571237 | 6906188 ~ 6907432 (+) | False | CI01000029_06906861_06907157 |
| TU176602 | other | downstream | 1299882 | 7634833 ~ 7637834 (+) | True | G155522 |
| TU176707 | other | downstream | 1596529 | 7931480 ~ 7932177 (+) | True | G155627 |
