RNA id: TU176222


Basic Information

Item Value
RNA id TU176222
length 216
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G155196
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6602316 ~ 6602531 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACAATGATGTCATTTTGGTTGTGACTGTTTCGGTAGTGACAATTTCAGATACTTTTGAGCCCAAAGATGCTAATCAGCACATGGTTAGCTAGCACTGTTCTGAACAGTTGAACACACACAAAAACTAAATTTTATGGAATAACAGCCAAAAAAGTTTGCTTAATTGCAGAAAAAAGGTGTTTGGGTAGTGACGTTCCTTAAAGTTACACACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176210 lncRNA upstream 23822 6578275 ~ 6578494 (+) True G155186
TU176186 lncRNA upstream 87338 6514727 ~ 6514978 (+) True G155162
TU176166 lncRNA upstream 169511 6431948 ~ 6432805 (+) True G155142
TU176152 lncRNA upstream 210323 6391776 ~ 6391993 (+) True G155128
TU176147 lncRNA upstream 217276 6384764 ~ 6385040 (+) True G155124
TU176219 lncRNA downstream 564 6603095 ~ 6607105 (+) True G155193
TU176220 lncRNA downstream 70406 6672937 ~ 6680968 (+) True G155194
TU176244 lncRNA downstream 86224 6688755 ~ 6689078 (+) True G155218
TU176262 lncRNA downstream 86750 6689281 ~ 6689937 (+) True G155236
TU176274 lncRNA downstream 119432 6721963 ~ 6722184 (+) True G155248
CI01000029_06494856_06495812.mRNA mRNA upstream 106469 6494391 ~ 6495847 (+) True CI01000029_06494856_06495812
CI01000029_06453008_06476863.mRNA mRNA upstream 125226 6453008 ~ 6477090 (+) True CI01000029_06453008_06476863
CI01000029_06443365_06447942.mRNA mRNA upstream 154374 6443365 ~ 6447942 (+) True CI01000029_06443365_06447942
CI01000029_06347167_06348123.mRNA mRNA upstream 254147 6346660 ~ 6348169 (+) True CI01000029_06347167_06348123
CI01000029_06305668_06307332.mRNA mRNA upstream 294641 6305245 ~ 6307675 (+) True CI01000029_06305668_06307332
CI01000029_06724205_06734079.mRNA mRNA downstream 121674 6724205 ~ 6735582 (+) True CI01000029_06724205_06734079
CI01000029_06775631_06791278.mRNA mRNA downstream 173100 6775631 ~ 6791346 (+) True CI01000029_06775631_06791278
CI01000029_06824397_06831521.mRNA mRNA downstream 221098 6823629 ~ 6832671 (+) True CI01000029_06824397_06831521
CI01000029_06834812_06849277.mRNA mRNA downstream 231046 6833577 ~ 6849518 (+) True CI01000029_06834812_06849277
CI01000029_06865685_06903896.mRNA mRNA downstream 263154 6865685 ~ 6903896 (+) True CI01000029_06865685_06903896
TU176095 other upstream 112022 6431535 ~ 6490294 (+) False G155083
TU176099 other upstream 112022 6431535 ~ 6490294 (+) True G155083
TU176089 other upstream 313918 6282685 ~ 6288398 (+) True G155079
TU175455 other upstream 1131970 5457241 ~ 5457472 (+) True G154531
TU175511 other upstream 1330781 5271020 ~ 5271535 (+) True G154587
TU176307 other downstream 303657 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176602 other downstream 1032302 7634833 ~ 7637834 (+) True G155522
TU176707 other downstream 1328949 7931480 ~ 7932177 (+) True G155627
TU177125 other downstream 2362287 8964818 ~ 9064541 (+) False G156007

Expression Profile