RNA id: TU177662


Basic Information

Item Value
RNA id TU177662
length 337
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G156477
representative False

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7065768 ~ 7066104 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACAGTTTTCCACTTTGCCACAGTCCATTTTAAATGAGCCTTGGCCCAGAGAAAACGCCTGCGCTTCTGGATCATGTTTAGATATGGCTTCTTTTTTGACCTATAGAGTTTTAGCCGGCAACGGCGAATGGCACGGTGGATTGTGTTCACCGACAATGTTTTCTGGAAGTATTCCTGAGCCCATGTTGTGATTTCTATTACAGTAGCATTCCTGTATGTGATGCAGTGCCGTCTAAGGGCCCAAAGATCACGGGCATCCAGTATGGTTTTCCGGCCTTGACCCTTACGCACAGATATTGTTCCAGATTCTCTGAATCTTTGGATGATATTATGCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177655 lncRNA downstream 10997 7054429 ~ 7054771 (-) True G156473
TU177651 lncRNA downstream 28282 7037181 ~ 7037486 (-) True G156469
TU177645 lncRNA downstream 36989 7028558 ~ 7028779 (-) True G156463
TU177641 lncRNA downstream 44034 7021086 ~ 7021734 (-) True G156459
TU177592 lncRNA downstream 163552 6893214 ~ 6902216 (-) True G156416
TU177679 lncRNA upstream 46149 7112253 ~ 7112673 (-) True G156492
TU177723 lncRNA upstream 101425 7167529 ~ 7169580 (-) True G156525
TU177740 lncRNA upstream 104547 7170651 ~ 7170951 (-) True G156542
TU177744 lncRNA upstream 118488 7184592 ~ 7184817 (-) True G156545
TU177746 lncRNA upstream 123570 7189674 ~ 7189989 (-) True G156547
CI01000029_06921800_06922750.mRNA mRNA downstream 142653 6921281 ~ 6923115 (-) True CI01000029_06921800_06922750
CI01000029_06832914_06833074.mRNA mRNA downstream 232694 6832709 ~ 6833074 (-) False CI01000029_06832914_06833074
CI01000029_06798103_06806327.mRNA mRNA downstream 258922 6798040 ~ 6806846 (-) True CI01000029_06798103_06806327
CI01000029_06739098_06769987.mRNA mRNA downstream 295781 6738714 ~ 6769987 (-) False CI01000029_06739098_06769987
CI01000029_06719634_06722376.mRNA mRNA downstream 342596 6719527 ~ 6723172 (-) True CI01000029_06719634_06722376
CI01000029_07332828_07336542.mRNA mRNA upstream 266191 7332295 ~ 7336542 (-) True CI01000029_07332828_07336542
CI01000029_07346183_07362585.mRNA mRNA upstream 279961 7346065 ~ 7362585 (-) True CI01000029_07346183_07362585
CI01000029_07388885_07402311.mRNA mRNA upstream 322140 7388244 ~ 7402678 (-) True CI01000029_07388885_07402311
CI01000029_07405933_07416452.mRNA mRNA upstream 339439 7405543 ~ 7416952 (-) True CI01000029_07405933_07416452
CI01000029_07419676_07421496.mRNA mRNA upstream 353531 7419635 ~ 7422668 (-) True CI01000029_07419676_07421496
TU175317 other downstream 2078343 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 2078343 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 2588556 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 3358516 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 3779214 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 104263 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 300223 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 300223 7366327 ~ 7369547 (-) False G156495

Expression Profile