RNA id: TU177679


Basic Information

Item Value
RNA id TU177679
length 268
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G156492
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7112253 ~ 7112673 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGAGGTTCATTCTCGTGTTACGCAACACGTTTGAGCTTCAGCAAGAACCAATGAGGTTCATTCTCGTGTTACGCAACACGTTTGAGCTTCTGCAAGAACCAATGAGGTTCATTCTTGTGTTACGCAACACGTTTGAGCTTCTGCAAGAACCAATGAGGTTCATTCTCGTGTTACGCAGCATGTTTGAGCTTCTGCAAGAACCAATGAGGTTCGTTCTCATGTTACGCAGCACGTTTGAGCTTCCGCAAGAACCAATGAGGTTCATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177662 lncRNA downstream 46149 7065768 ~ 7066104 (-) False G156477
TU177659 lncRNA downstream 46149 7065842 ~ 7066104 (-) True G156477
TU177655 lncRNA downstream 57482 7054429 ~ 7054771 (-) True G156473
TU177651 lncRNA downstream 74767 7037181 ~ 7037486 (-) True G156469
TU177645 lncRNA downstream 83474 7028558 ~ 7028779 (-) True G156463
TU177723 lncRNA upstream 54856 7167529 ~ 7169580 (-) True G156525
TU177740 lncRNA upstream 57978 7170651 ~ 7170951 (-) True G156542
TU177744 lncRNA upstream 71919 7184592 ~ 7184817 (-) True G156545
TU177746 lncRNA upstream 77001 7189674 ~ 7189989 (-) True G156547
TU177714 lncRNA upstream 95877 7208550 ~ 7208864 (-) True G156516
CI01000029_06921800_06922750.mRNA mRNA downstream 189138 6921281 ~ 6923115 (-) True CI01000029_06921800_06922750
CI01000029_06832914_06833074.mRNA mRNA downstream 279179 6832709 ~ 6833074 (-) False CI01000029_06832914_06833074
CI01000029_06798103_06806327.mRNA mRNA downstream 305407 6798040 ~ 6806846 (-) True CI01000029_06798103_06806327
CI01000029_06739098_06769987.mRNA mRNA downstream 342266 6738714 ~ 6769987 (-) False CI01000029_06739098_06769987
CI01000029_06719634_06722376.mRNA mRNA downstream 389081 6719527 ~ 6723172 (-) True CI01000029_06719634_06722376
CI01000029_07332828_07336542.mRNA mRNA upstream 219622 7332295 ~ 7336542 (-) True CI01000029_07332828_07336542
CI01000029_07346183_07362585.mRNA mRNA upstream 233392 7346065 ~ 7362585 (-) True CI01000029_07346183_07362585
CI01000029_07388885_07402311.mRNA mRNA upstream 275571 7388244 ~ 7402678 (-) True CI01000029_07388885_07402311
CI01000029_07405933_07416452.mRNA mRNA upstream 292870 7405543 ~ 7416952 (-) True CI01000029_07405933_07416452
CI01000029_07419676_07421496.mRNA mRNA upstream 306962 7419635 ~ 7422668 (-) True CI01000029_07419676_07421496
TU175317 other downstream 2124828 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 2124828 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 2635041 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 3405001 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 3825699 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 57694 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 253654 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 253654 7366327 ~ 7369547 (-) False G156495

Expression Profile