RNA id: TU177151


Basic Information

Item Value
RNA id TU177151
length 671
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id G156028
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 9155752 ~ 9157445 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTACAGCGTCACAGCAGCGGCTCCAAGATACATATAAAGTGAACATTTCTTTACAAAGACAACTATAAATTTGTTTTTTTAAGTTGGTAATTTATAAACTTGATAGTCTGGAAAGTTTGTTAACATGGGGAGTATAATATTCCCATGTAAACGTAAATAAATAAATAAATAAAAGCCTCGTGTCATCCATTTCTGCACACGAATGAGCTGTTGAGAATCACTCCAGCGGAGAGGAGCAGAGAATATGTGCTGCTGTCCTTTCAGGAACACCAGACCTGTGAGTGCAGGCCCAGACGACACCACTTGAGAAATCAACACAACCAGAGACGGAAGGGTAAACGCAGGAGGAGACGGAGAGGGAGGAAAGACAGGGATTGAGACGCTGCCGGTGTCAGATGTGACGATCACTTTGGCTCCTTCATCATCATCATCACAAGCACTTCTGGACATTAGCGTGGACAGAACGGCCGGCAGTTTGCAGTTTGACACATATAACGATCAAGAAACATTTTTGTTTATTATATATTGCAATTACTATAATGAGTTGATCAGACACATCATCTATTTACAGGTATGTTTGGATTGTCATTGAGAAATGTGTGTAAGAATAAAGCTGCTCAGGCGTTATCAGGGAATACACACGTGAGCACATGTAAAATACTTTACCTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177217 lncRNA upstream 30666 9124475 ~ 9125086 (+) True G156091
TU177166 lncRNA upstream 37119 9117716 ~ 9118633 (+) True G156043
TU177211 lncRNA upstream 38829 9116632 ~ 9116923 (+) True G156087
TU177138 lncRNA upstream 53950 9096378 ~ 9101802 (+) True CI01000029_09091229_09095666
TU177153 lncRNA upstream 59578 9095931 ~ 9096174 (+) False CI01000029_09091229_09095666
TU177231 lncRNA downstream 24994 9182439 ~ 9182656 (+) True G156099
TU177239 lncRNA downstream 50928 9208373 ~ 9208598 (+) True G156107
TU177241 lncRNA downstream 69806 9227251 ~ 9227785 (+) True G156109
TU177244 lncRNA downstream 81810 9239255 ~ 9239481 (+) True G156112
TU177245 lncRNA downstream 82637 9240082 ~ 9240339 (+) True G156113
CI01000029_09146276_09147817.mRNA mRNA upstream 7921 9146224 ~ 9147831 (+) True CI01000029_09146276_09147817
CI01000029_09142383_09143514.mRNA mRNA upstream 12224 9142331 ~ 9143528 (+) True CI01000029_09142383_09143514
CI01000029_09132920_09139682.mRNA mRNA upstream 15433 9132570 ~ 9140319 (+) True CI01000029_09132920_09139682
CI01000029_09091229_09095666.mRNA mRNA upstream 58739 9091103 ~ 9097013 (+) False CI01000029_09091229_09095666
CI01000029_09079841_09080368.mRNA mRNA upstream 75117 9078993 ~ 9080635 (+) True CI01000029_09079841_09080368
CI01000029_09159075_09162036.mRNA mRNA downstream 1630 9159075 ~ 9162464 (+) True CI01000029_09159075_09162036
CI01000029_09166838_09170965.mRNA mRNA downstream 9393 9166838 ~ 9170980 (+) True CI01000029_09166838_09170965
CI01000029_09183609_09186199.mRNA mRNA downstream 25588 9183033 ~ 9186473 (+) True CI01000029_09183609_09186199
CI01000029_09196479_09205243.mRNA mRNA downstream 37619 9195064 ~ 9205417 (+) True CI01000029_09196479_09205243
CI01000029_09272016_09280223.mRNA mRNA downstream 114536 9271981 ~ 9280885 (+) True CI01000029_09272016_09280223
TU177125 other upstream 91211 8964818 ~ 9064541 (+) False G156007
TU176707 other upstream 1223575 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 1517918 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 2248320 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176099 other upstream 2665458 6431535 ~ 6490294 (+) True G155083

Expression Profile