RNA id: TU181329


Basic Information

Item Value
RNA id TU181329
length 395
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G159714
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 4128383 ~ 4128777 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAGAGACGACGGCAGACAAGAAGTAACTACAGTTCACCGTCCCTCTTACTCCTACTGAATTAAATCACAAAACTTATTTTAAACAACGGCTGCATAACATTTCATTGCCTGCATATTTAAACACTGTAATTTATGCAGAATAACTTTAGCAAAAACCCAAATTTCAGATTGACACCAGTACGATTTTTTTTTTTTTTTTTTTAATTAAACACTTCTTTGTAGACCTCATGACATCAGTTGACAAGTGTAGCCAATAGGTTATATAGTGCGTTAAAGTCCTCCTGGGAAGTTTGTATTGGGTTGAGTTGGGACGTTGTAATTACGACATCACATGTGTTCAAATCACTTTGGCCGGAGCAAGTTGGCAATGTACCTTTTCTATAACAAATACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181230 lncRNA upstream 99826 4026534 ~ 4028557 (+) True G159631
TU181201 lncRNA upstream 153796 3974230 ~ 3974587 (+) True G159604
TU181190 lncRNA upstream 193939 3934123 ~ 3934444 (+) True G159593
TU181056 lncRNA upstream 208516 3851992 ~ 3919867 (+) False G159484
TU181342 lncRNA downstream 10206 4138983 ~ 4139239 (+) True G159727
TU181304 lncRNA downstream 13607 4142384 ~ 4142789 (+) True G159689
TU181307 lncRNA downstream 15444 4144221 ~ 4145049 (+) True G159692
TU181288 lncRNA downstream 18262 4147039 ~ 4150826 (+) True G159675
TU181282 lncRNA downstream 43651 4172428 ~ 4181386 (+) True G159673
CI01000030_04070253_04083457.mRNA mRNA upstream 44491 4069447 ~ 4083892 (+) True CI01000030_04070253_04083457
CI01000030_03926592_03926762.mRNA mRNA upstream 201178 3926592 ~ 3927205 (+) True CI01000030_03926592_03926762
CI01000030_03917423_03918481.mRNA mRNA upstream 209709 3917423 ~ 3918674 (+) True CI01000030_03917423_03918481
CI01000030_03915675_03916993.mRNA mRNA upstream 211390 3915286 ~ 3916993 (+) True CI01000030_03915675_03916993
CI01000030_03909138_03910046.mRNA mRNA upstream 218337 3909038 ~ 3910046 (+) True CI01000030_03909138_03910046
CI01000030_04163915_04171784.mRNA mRNA downstream 35138 4163915 ~ 4171907 (+) True CI01000030_04163915_04171784
CI01000030_04183583_04213798.mRNA mRNA downstream 54806 4183583 ~ 4213798 (+) True CI01000030_04183583_04213798
CI01000030_04219745_04223677.mRNA mRNA downstream 90968 4219745 ~ 4224790 (+) True CI01000030_04219745_04223677
CI01000030_04237332_04243409.mRNA mRNA downstream 104911 4233688 ~ 4243787 (+) True CI01000030_04237332_04243409
CI01000030_04271795_04300240.mRNA mRNA downstream 143018 4271795 ~ 4301044 (+) True CI01000030_04271795_04300240
TU180187 other upstream 1084610 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 1514090 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 1846013 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 2490156 1636867 ~ 1638227 (+) True G157726
TU178651 other upstream 3121696 1003889 ~ 1006687 (+) True G157332
TU181300 other downstream 303023 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 388001 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 3071158 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 3725308 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 4109188 8237965 ~ 8239604 (+) True G162088

Expression Profile