RNA id: CI01000030_03926592_03926762.mRNA


Basic Information

Item Value
RNA id CI01000030_03926592_03926762.mRNA
length 614
RNA type mRNA
GC content 0.34
exon number 1
gene id CI01000030_03926592_03926762
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3926592 ~ 3927205 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTGAATCTTGGTGGGACACCTTTGCGTTTTGGAACTGGAGATCTGAGGATGAAATCGAAGAGTTCAGAAAGAAAAGAGCAGCGAGACAGAGACAGGATGGAGATAAGGTCGGACCACGGAAGATCCGTAACAAAGAAATGGCTAAAGGATTACTCAAGGAGAGGGAATAGTCTGTAATATACCTAAAACTGTGTTATGGATGAAATATATATAGTAAATAAATATATATAACTCTCACCTGAATTATGGTTTATATAAACCTAAAACCACTTGTAACATTTTGAGAGCAATTTCCAGGAGTCATAGTGAATACATTAACATTCATTATACATATAACTGACACAGAGAAAAGCTTTATGAATATTTACTTCATTCAAACAGCCACATTTTTCATGAGCTCAGCACTGATGCATATCTATGTTAACAGGGCATCTAATTATTTCATAGAGCTAAAAGTGGTCCACAAGTTTCTTCTTTATATCATTGAATATGTAAATTTTCTCTCCTAATTTACACTTCAAATTACAGCTTATGTTGCACGTTTGCATATGTACCAGGTCTATTTGCATACATTTTGTAAAAACTGAGAGCTTTGTGTATTTTCAGGCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181056 lncRNA upstream 6725 3851992 ~ 3919867 (+) False G159484
TU181055 lncRNA upstream 6725 3855067 ~ 3919867 (+) True G159484
TU181062 lncRNA upstream 18103 3906081 ~ 3908489 (+) True G159490
TU181147 lncRNA upstream 82596 3843788 ~ 3843996 (+) True G159561
TU181128 lncRNA upstream 102041 3824287 ~ 3824551 (+) True G159556
TU181190 lncRNA downstream 6918 3934123 ~ 3934444 (+) True G159593
TU181201 lncRNA downstream 47025 3974230 ~ 3974587 (+) True G159604
TU181230 lncRNA downstream 99329 4026534 ~ 4028557 (+) True G159631
TU181329 lncRNA downstream 201178 4128383 ~ 4128777 (+) True G159714
TU181342 lncRNA downstream 211778 4138983 ~ 4139239 (+) True G159727
CI01000030_03917423_03918481.mRNA mRNA upstream 7918 3917423 ~ 3918674 (+) True CI01000030_03917423_03918481
CI01000030_03915675_03916993.mRNA mRNA upstream 9599 3915286 ~ 3916993 (+) True CI01000030_03915675_03916993
CI01000030_03909138_03910046.mRNA mRNA upstream 16546 3909038 ~ 3910046 (+) True CI01000030_03909138_03910046
CI01000030_03838027_03838812.mRNA mRNA upstream 85647 3836328 ~ 3840945 (+) True CI01000030_03838027_03838812
CI01000030_03825765_03826754.mRNA mRNA upstream 99798 3825415 ~ 3826794 (+) True CI01000030_03825765_03826754
CI01000030_04070253_04083457.mRNA mRNA downstream 142242 4069447 ~ 4083892 (+) True CI01000030_04070253_04083457
CI01000030_04163915_04171784.mRNA mRNA downstream 236710 4163915 ~ 4171907 (+) True CI01000030_04163915_04171784
CI01000030_04183583_04213798.mRNA mRNA downstream 256378 4183583 ~ 4213798 (+) True CI01000030_04183583_04213798
CI01000030_04219745_04223677.mRNA mRNA downstream 292540 4219745 ~ 4224790 (+) True CI01000030_04219745_04223677
CI01000030_04237332_04243409.mRNA mRNA downstream 306483 4233688 ~ 4243787 (+) True CI01000030_04237332_04243409
TU180187 other upstream 882819 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 1312299 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 1644222 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 2288365 1636867 ~ 1638227 (+) True G157726
TU178651 other upstream 2919905 1003889 ~ 1006687 (+) True G157332
TU181300 other downstream 504595 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 589573 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 3272730 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 3926880 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 4310760 8237965 ~ 8239604 (+) True G162088

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040487 True 619 mRNA 0.43 5 NC_007133.7 20720808 ~ 20747062 (+)