RNA id: CI01000030_03838027_03838812.mRNA



Basic Information


Item Value
RNA id CI01000030_03838027_03838812.mRNA
length 4618
RNA type mRNA
GC content 0.37
exon number 1
gene id CI01000030_03838027_03838812
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3836328 ~ 3840945 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTACAAAACGCAAGGTGCGCAAGACTAGAAGATCTGCGCATACTCTCATGCTACTGTTGAGATTTTGATAATATGCATTCTGTGGATCCAAAATTATTTAAACAGTTAAGGTATGAATTTGGCATTACGTATAGCATATGGTTAATATGGTTAGCTAAATACATAAAACCATAAAAAACTTGATGTACTAAGATAACTGAAACTGAAACTAAAAATGAAATAAAAATAATAAAAAATGAATACAAGCTATATAGACATTTTTTAAAAAAATCTAATAAAAGTAGCAAACATTTACAAAAACTTTAACATTAAAATGGAAAATATAAAAAACTATAATAGTATCTAATGATACTAAAATAACACTGACACAGGCATATATCAAATTAAGTAGCATTTAATTTTAAATAAATATAGCACATAAAAGTTTTAAGTTAAACTATTCACAAAAGGTTGTTAGGTTCTAAGTTATTAAATAATCAATACACTAATTAAAGTTCACATTTTGGGGTTTCTGTTTTGAAAAATAAAATAAATGATAAAAAAAAAAAATAATAATAATACAATAATCCAAGTCTGAGACTTTTGACTTAATATATCCACAAAGCATGAAAAAAGTCTTTTGTTTGCACATGACACTTGTTTGATACTGAGTTATCTAATGCAATGACATTCAGACATTTGTAAATGTGACTACAAGAAGTCTTTAGAAAACTAAATAAACTAATTAAAAGACCCATATGATTGAGTGGAAGAAAGTGATGTTTTATCTGACCTTTTGTCAGGAAAGGAAGCTAAAATTAACACTATCAGCATAGAGACAATACAATGTGTTAATGACATCAGAGGGGAAGTCGGTCTAGGTCTTAGGTCTAATGTACAGTTTGTTAGCATGGCATTCGTTCTTACTAGATCTCTCTGTCCTCCACAATAAATAATTCTTCCACTGGTAACCCACAAAATGACAGCTTATCAGACACTGTGTGGGTTCTTGGAACCCCCAGTGGGAAGTCTCAGGTTCCGATCTTGTCTGAATCACCCCAGTGGCCGCACTCATGTCCTGGATTCTGCACACGCCCCCAACACTTCATAGTCACTTTATAATCAGCCTGTTGCTATTAGCATTGCTCAAGTGTTTTTGAACTGTCAGTGGTATTGCAATTGCTAATAGGCAGAGAGCTGAAACTGAAAGTCCTTGACATAGACTTTGATGCTTCTACAGGTTTTAGTAATAATCTGAAACAATTGTTAATACTTGAATTTTAAATTAGCAAGACATGCAGCTGTTCAACTGACTAGCGCAACTGCAACAACAACAATAGTCACTACAAAGGGATTTTTTGTCCTATTACCTCATCTACAACCCTACTGACAAAAACATTACACAGTTTTAGGTTCAGCTGTGTGGCACCTGTAACCAAACTGGTCTCTAGGTAAAGGTCAAGACGTTTAACAGAAATTAATTTGCTATGACACTCGTAACCTATTGCAGATTGTATCAATGACTGTAATATGACACATAAATGAATCAATAAGACCACCTGCAAAGGAAATAACTCTGCTCTTTCGTCATAGGTAAAGCTCCTGGTGACAGCATGACTGAGAAGTGAGTCTAATATCTGACTAACTCCAGACACCACACACAGAAAGAGTGTATGTGCATCTTGCGTGAAACCAATCAGAAAGTTCCTACCCGGTGAAAATGGAGTCCGCTTTCTCACGGATGAGGTGGGAACCTGATGAAGAGGCTGAAGAGACCTCCTTGAGAGGTCTGGGATTGCGTCGCAAACGGGAGTTCATCCCCGAGGAAAAGAAAGATGCGACTTACTGGGAGAAACGCCGCAAGAACAACGAAGCGGCGAAGCGCTCGCGAGAGAAGCGAAGGGTCAATGACTACGTATTGGAGACTCGTTTGGTTTCACTGAGCGAGGAAAATGCCCGTCTACGAGCTGAGCTGTTGACTCTAAAGCTTCGGTATGGTTTGCTCAACTCTGGAGCCCCCTTCTCTTCATCTCAAAGGGCTCTATCTCAGCTTCACTCTTTGGCCCCACAACCCCTGGTTTCTTGCCCAGACAAAGATCTCTACTGGGGTAGAAGGCAAGAGAGAGAGGCTTCCAATCTATTGGGGAACCAACAAGCACCCGTCTGTCTGGGTACCCACCCTGGGTCGGCATTCCTTCCCGCGCAGCCTATGGCCATGAGAAGAAATCAACCATACTTCCTAGACTTCCCCACCCTCCATTCTCCTACAGCCGCACCTTTACTCTTTCCACCACACCTTGCCCCAGCAACAGCACCTTGGGCAGGACGGCCCCTGCTCCAGCCAGGGAGTCAGAGGATCTTGTCGGACGACGAGGGGGAGCAGCAAGTGCCGGCGGATTCCAGCACTGCCCTGCCCCATAAACTAAGACTGAAGTCGCAAAACTCACAGCGCAAAGACAATGGAGCTAAATCTGCATCTCCTATTCCAGCATACATGTCAGATTGAAATCAAACTGTCTAAAATTACTCAGCAGATATGAATCATCCTTAATTACCACATTTGTGGTATTTAAACTTGGCTATATTCCAGGACGTTTGTTGTAAACCATCTGATAAAAGAAATATTTCTTTGATCAAAAGGTCAGATATACAGATATAGTTTCCAAAATTCATTTTGAAGAGTCAGTGTTTCCAGTATTGAAGTAGAAAGAGGCAAACTTGAATTAGGATAATGACGCACATTTTTAAGTACTTGAAATGTTCCACCTCTTTTTTACCTTTAGCATAGACAGGAAAGTAGAGATGAAATAAGGAGAATAGGATCAGGACTTGACCCAGGTCAGACTCAAACCAGAGTCATTTTGAGCTTACAGCTTTGATGTCAGATTGACATTTTCGCATTTGACAGATGCTTTAAGCTAGTTACGTTGCATTTAGTATATATATATATATATATATATATATATATATATATATATATATATATATATTCATGCATTCCCTATTACAACAGAAATGTTGTAATGTTCATGTTGGGGGGGTGGGGGGGATCTCAAAGAGGTTGGATCTGATGCTGATAGCATCCATTTGCAATTTCTTTCAGAACATCAATATATGTCTCTGAGTGGCCTAAAATATTTGGTTAACCAAAAATCAGATGCATGCAAATGAGATTTTAGGGAAACTCGCCACACCTCAAAGAGTCTGAAAGGAGGAGCTAAGAGGATCTTTCTGGAATCCTTTAATTGTTCTGGTTCTTAATTGTTTGATGCGTGTCGCTGGCTATGTCATGTGACATCTCAGTCATGAGACTTTTTTTTGATATGGCTCCTGTGTTTGGAAAGGTGTTCATGCACAAACTAAGGTCATCTGTGACCAAAATAGTTGCTTGCTTGCTACACAAAGTTAAAGTTGTCATCCCATAATATGTGGCCTGTAATTTCTGCCATCATATCTTTTAACATGTTTTGAGTTCTGCATATGACCCAGTGCTACACATGAACATACAGTGCCTTTGCACAGTGTACCTGCTGTAAACTAGTCTTAATTCAATTTCATGTAATTTTTAATTACACAATACATTATTTATAGTTTTTGAAAGACTTGGAATTATAAAGTGCTGATCTTTGATGACGACGAAATTCTTTTGTTCGATTTATAGCGTGTAATTTTAGATTAATGCATGATCATTGTTATCTTTTAGAGACAAATGGCTCAAACATAGACTGACCAACAAAAACAACTTCCAAATCTCAGGCATTTTGTTTCTGTTGATGTTAAAACATGCACAGGGGCTGCTAAGAGCTTTTTTGATAACCTTGCAACACATTTGAACTTACTTATAAAATCTTCTCAGTCTTCTTTATTCTTCTCAGACACTTTATTCAAATGGTCTTAGCAACAGATATGCTAAGTTCTTGGTAAGTGCTTGAAGACCGATCTTCATTTTATAAAATAATTTACAAGCTATTTGTCCACAATGTATTCTTTTTCTTTTTTGGTACATTCTTGAATGACAACATAGCTAATGCAGTTAGCATTGGCACGCTAACTGCATTAGCCATGTTAGCAACAACAGTGGCTGACAAAGCATTAGCAGCTAATTAACAAGGAGGATATCTAAAACCTTGTGTCACTGACTGACCAGCTCATTTTCATTTAGAAATACAGTTTATGAATGTAAATCACTTTTGCTTATATGTCATTTTAGGTTCACAACTCAATAATGAAATATTGAATATAGAAAGACAATCAAAAAAATTATTAGCCTAGTTTGAAAACGGATTACCTTAAGTCTTCTCTTAAGGTGCGTTCAGTTCATGTAGTTATTTACCGTAATTACAAGATTTCAACTTGTAAAAGGCATTCACGTTCTTGTAGAGCTTGTGATTACAGCTTGTAAGAATGGGTGCGTTTGACTTGAAGAGGCACTGCACAGATCGATCGGTGTATGACATTAAAGTACTGCGAGAGTGATTAATGAGCAGACATAGTGTTGTGCTAATAGTTGAGCTACAGGAGCAGCACTTATGTACTTTTTAAAAAATAATTTTAACACATTTTTACAAAGATTCATATTTTATACATTTTGTCATGTTGCATTAAGCTGTATGATCTTCAGAGTTTTTTCATTTTTACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU181128 lncRNA upstream 11777 3824287 ~ 3824551 (+) True G159556
TU181125 lncRNA upstream 16282 3819821 ~ 3820046 (+) True G159553
TU181124 lncRNA upstream 19329 3816762 ~ 3816999 (+) True G159552
TU181120 lncRNA upstream 24348 3811732 ~ 3811980 (+) True G159548
TU181119 lncRNA upstream 25114 3810733 ~ 3811214 (+) True G159547
TU181147 lncRNA downstream 2843 3843788 ~ 3843996 (+) True G159561
TU181056 lncRNA downstream 11047 3851992 ~ 3919867 (+) False G159484
TU181055 lncRNA downstream 14122 3855067 ~ 3919867 (+) True G159484
TU181062 lncRNA downstream 65136 3906081 ~ 3908489 (+) True G159490
TU181190 lncRNA downstream 93178 3934123 ~ 3934444 (+) True G159593
CI01000030_03825765_03826754.mRNA mRNA upstream 9534 3825415 ~ 3826794 (+) True CI01000030_03825765_03826754
CI01000030_03765594_03778884.mRNA mRNA upstream 57296 3765062 ~ 3779032 (+) True CI01000030_03765594_03778884
CI01000030_03744173_03745628.mRNA mRNA upstream 90587 3743491 ~ 3745741 (+) True CI01000030_03744173_03745628
CI01000030_03715463_03716370.mRNA mRNA upstream 118759 3714611 ~ 3717569 (+) False CI01000030_03715463_03716370
CI01000030_03703231_03704355.mRNA mRNA upstream 131713 3702173 ~ 3704615 (+) False CI01000030_03703231_03704355
CI01000030_03909138_03910046.mRNA mRNA downstream 68093 3909038 ~ 3910046 (+) True CI01000030_03909138_03910046
CI01000030_03915675_03916993.mRNA mRNA downstream 74341 3915286 ~ 3916993 (+) True CI01000030_03915675_03916993
CI01000030_03917423_03918481.mRNA mRNA downstream 76478 3917423 ~ 3918674 (+) True CI01000030_03917423_03918481
CI01000030_03926592_03926762.mRNA mRNA downstream 85647 3926592 ~ 3927205 (+) True CI01000030_03926592_03926762
CI01000030_04070253_04083457.mRNA mRNA downstream 228502 4069447 ~ 4083892 (+) True CI01000030_04070253_04083457
TU180187 other upstream 792555 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 1222035 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 1553958 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 2198101 1636867 ~ 1638227 (+) True G157726
TU178651 other upstream 2829641 1003889 ~ 1006687 (+) True G157332
TU181300 other downstream 590855 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 675833 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 3358990 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 4013140 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 4397020 8237965 ~ 8239604 (+) True G162088

Expression Profile