RNA id: TU181128


Basic Information

Item Value
RNA id TU181128
length 265
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G159556
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3824287 ~ 3824551 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTTCATGCAAGTCATTCTCAGTAATCTGTTCTTTTTAACCACAAGAAACAATGTTTTACATGATCTTACCATCAGGAGTTTCAGTTTTTATTGCGCTTCATCTTCTTCATTTGACTGACATTCTAACACTTTCTGAAGAATTTGGTTTGCTAAGAAATGATGAATACTTGCGTATATTAAGCAGAATATAATAAATAAATACACAACAACACACATATGCCCAATACTAGCATGCTATTTGAATTGTGAAGTTAGGCCTCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181125 lncRNA upstream 4241 3819821 ~ 3820046 (+) True G159553
TU181124 lncRNA upstream 7288 3816762 ~ 3816999 (+) True G159552
TU181120 lncRNA upstream 12307 3811732 ~ 3811980 (+) True G159548
TU181119 lncRNA upstream 13073 3810733 ~ 3811214 (+) True G159547
TU181118 lncRNA upstream 14048 3809938 ~ 3810239 (+) True G159546
TU181147 lncRNA downstream 19237 3843788 ~ 3843996 (+) True G159561
TU181056 lncRNA downstream 27441 3851992 ~ 3919867 (+) False G159484
TU181055 lncRNA downstream 30516 3855067 ~ 3919867 (+) True G159484
TU181062 lncRNA downstream 81530 3906081 ~ 3908489 (+) True G159490
TU181190 lncRNA downstream 109572 3934123 ~ 3934444 (+) True G159593
CI01000030_03765594_03778884.mRNA mRNA upstream 45255 3765062 ~ 3779032 (+) True CI01000030_03765594_03778884
CI01000030_03744173_03745628.mRNA mRNA upstream 78546 3743491 ~ 3745741 (+) True CI01000030_03744173_03745628
CI01000030_03715463_03716370.mRNA mRNA upstream 106718 3714611 ~ 3717569 (+) False CI01000030_03715463_03716370
CI01000030_03703231_03704355.mRNA mRNA upstream 119672 3702173 ~ 3704615 (+) False CI01000030_03703231_03704355
CI01000030_03594936_03629403.mRNA mRNA upstream 194802 3594936 ~ 3629485 (+) True CI01000030_03594936_03629403
CI01000030_03825765_03826754.mRNA mRNA downstream 864 3825415 ~ 3826794 (+) True CI01000030_03825765_03826754
CI01000030_03838027_03838812.mRNA mRNA downstream 11777 3836328 ~ 3840945 (+) True CI01000030_03838027_03838812
CI01000030_03909138_03910046.mRNA mRNA downstream 84487 3909038 ~ 3910046 (+) True CI01000030_03909138_03910046
CI01000030_03915675_03916993.mRNA mRNA downstream 90735 3915286 ~ 3916993 (+) True CI01000030_03915675_03916993
CI01000030_03917423_03918481.mRNA mRNA downstream 92872 3917423 ~ 3918674 (+) True CI01000030_03917423_03918481
TU180187 other upstream 780514 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 1209994 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 1541917 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 2186060 1636867 ~ 1638227 (+) True G157726
TU178651 other upstream 2817600 1003889 ~ 1006687 (+) True G157332
TU181300 other downstream 607249 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 692227 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 3375384 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 4029534 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 4413414 8237965 ~ 8239604 (+) True G162088

Expression Profile