RNA id: TU181062


Basic Information

Item Value
RNA id TU181062
length 1267
lncRNA type antisense_over
GC content 0.43
exon number 6
gene id G159490
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3906081 ~ 3908489 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAGTACTACAAACACTTTTATTTGGAAACTTAACACTGAAAACACAAAAATATACAAAATTAACTGAACACAAGCAACAAATTGGGAAGCCATTAAATGAGTACATCAAAAAAAGACAAAGCCAGAGAACAAACAATGAACATTCTGCAACTGTTGCAATATTCTTGATTTGCATACTAGTATTAGTACACACTGCCATCATTAGGCCTCAGGAGGAACTACCGTCTCCAAGTCTTTGATGATCACGACACCCTTCTCTATTTCCAAGTCACTCTCAGTGTCATTGTGTGACCGGTATTCCTCACTGTCCGTCTCAACTGCAGTGGGCTCATAATCTGGATCAGCTACATGGTCTTCCTCGGCCAGTTCCTGATTGAGCGCCTCTACCCAGGACTGCTGCTCTACCTCCTCTTCCTCATCCAGGTCATCCTGCTTTCTCTTGCTGCCTTTTCCACAAGGCTTGGTAGGGGAACAACGCACCTCTGGGGACACAGCACAGCCAATGCTGGTGCAGACCGGATAACCCAGAGCGCTCTGGATGCGCCGGGGCAGGATGGCCAACAGTAGCCGTGTGGCCCTGTGAAGACGCTTCCGGACTGTTCTGCACTGTCTGTCTTTAGGGGAGCCACCTTTTTCATCAACGGCTGGAGAGATGGCCTTCACTGGCGTGGAGAACCCAAACAGCCACCACAAGCCACGGAAAGCCCGCATAGTCAAACTGACTGGCCAAAACTGTGAAATCCGACAGAGGATGGCTGAAACGACTCCACCTCTCTTCGCCACAGCTTTCTTCTCTTGGCCCTCAGTGTTTTCAGACTCAACGGTGTAGTTGCACTGGTTAGTCATCTCGATGCTCACTCTGTATTAATCCACCGACTGTCTAAAAGCGATTCCCCGCCAATTTACAAGCAACCATGCACGTGCTAATTAAAACAGGTGAGTTTTTCCAGCCCACCGCGGTTTGTGCGCGTGTCCGCATGCGTGGAGACCTTGGCTGTGTACCATTTGAAATACTAGCGTACTGTATGCTGCGCAGTATATTTTACTGTTTATTAAGTATGGGAAAATCTTGGTAAAAAATAAAAATAAAAAAGCCCGACAAAGATATGAACATGAAAATATGAACATTCAAATAATATAAATTAATAATATAATATAAATATACTATATGATTTATTATTTTTTTTAACGAAATATTAAAAATATAAGTTACATTTCCAGTTTCGTTTAAATTAATTAATTCCAGTGTAGCCTACCTATAAATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181147 lncRNA upstream 62085 3843788 ~ 3843996 (+) True G159561
TU181128 lncRNA upstream 81530 3824287 ~ 3824551 (+) True G159556
TU181125 lncRNA upstream 86035 3819821 ~ 3820046 (+) True G159553
TU181124 lncRNA upstream 89082 3816762 ~ 3816999 (+) True G159552
TU181120 lncRNA upstream 94101 3811732 ~ 3811980 (+) True G159548
TU181190 lncRNA downstream 25634 3934123 ~ 3934444 (+) True G159593
TU181201 lncRNA downstream 65741 3974230 ~ 3974587 (+) True G159604
TU181230 lncRNA downstream 118045 4026534 ~ 4028557 (+) True G159631
TU181329 lncRNA downstream 219894 4128383 ~ 4128777 (+) True G159714
TU181342 lncRNA downstream 230494 4138983 ~ 4139239 (+) True G159727
CI01000030_03838027_03838812.mRNA mRNA upstream 65136 3836328 ~ 3840945 (+) True CI01000030_03838027_03838812
CI01000030_03825765_03826754.mRNA mRNA upstream 79287 3825415 ~ 3826794 (+) True CI01000030_03825765_03826754
CI01000030_03765594_03778884.mRNA mRNA upstream 127049 3765062 ~ 3779032 (+) True CI01000030_03765594_03778884
CI01000030_03744173_03745628.mRNA mRNA upstream 160340 3743491 ~ 3745741 (+) True CI01000030_03744173_03745628
CI01000030_03715463_03716370.mRNA mRNA upstream 188512 3714611 ~ 3717569 (+) False CI01000030_03715463_03716370
CI01000030_03909138_03910046.mRNA mRNA downstream 549 3909038 ~ 3910046 (+) True CI01000030_03909138_03910046
CI01000030_03915675_03916993.mRNA mRNA downstream 6797 3915286 ~ 3916993 (+) True CI01000030_03915675_03916993
CI01000030_03917423_03918481.mRNA mRNA downstream 8934 3917423 ~ 3918674 (+) True CI01000030_03917423_03918481
CI01000030_03926592_03926762.mRNA mRNA downstream 18103 3926592 ~ 3927205 (+) True CI01000030_03926592_03926762
CI01000030_04070253_04083457.mRNA mRNA downstream 160958 4069447 ~ 4083892 (+) True CI01000030_04070253_04083457
TU180187 other upstream 862308 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 1291788 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 1623711 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 2267854 1636867 ~ 1638227 (+) True G157726
TU178651 other upstream 2899394 1003889 ~ 1006687 (+) True G157332
TU181300 other downstream 523311 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 608289 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 3291446 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 3945596 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 4329476 8237965 ~ 8239604 (+) True G162088

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041466 True 893 mRNA 0.51 6 NC_007133.7 20689958 ~ 20695237 (-)