RNA id: CI01000034_02421189_02423360.mRNA



Basic Information


Item Value
RNA id CI01000034_02421189_02423360.mRNA
length 963
RNA type mRNA
GC content 0.43
exon number 2
gene id CI01000034_02421189_02423360
representative True

Chromosome Information


Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 2421026 ~ 2423527 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATTAAAATAACACCCTCAATTTCCACTACTTACAGAGATGGACATACACACACACACTAACTTCACACATTTTCACAGTTTGAGAGAGGTGAACGATGTTAAATTCAGTAGCCAGATAAGCAAAGACAAAAGAGTGACAACGTCTGCATCTTAATTGAAACATGTCCACACTTTCAAATGCAAAACAGAGCCTGTCATTTAACAGCCTCCCTCCAGCCCTCCAAGACAGGGCATTTACTGTGGCCTCAAGCAAAGGGGTCAAAGGTGATTGGACAGACATCTGCCACAACAATGACTCAGACTGTCTGACACAACAGACCAGTGCAGATTTACAGCACACATGTTTGAAAAGACTCCACTTCTCCTTTCTGCTCTGCTTGCTTAACTTCTGGTTTCAATGGATGATTGTGGAGCTGTGCTGCTGGATATGGAGCGTAAGATATAACAGACTTCACACTGAACAAAGCTTCATTGGGTGGTTGGTTTCATCCAGCGAAAGCTTGTCAGATCAGAGATGGATCCTGCAGTTAACCTGCAGCTGCTGCAGCACACGCCACTGGCATAACGTGCTAGAAGCTTGCAAGGGCGTATTCAACCTAAAACCACAGCGAGGAGGAGATGGTGTGTGCAACACAAGGAAAAGAAATGAAGTCAAAGAGCCATCATATCAAATCAGAGGGCTCCAGTCATCCTCTCCATTGGAGGTGACAGTACTAAAAGGCCTGGTCTTTACAAAGGAGCTGCTATGTCTCCAACATTATCAGAGGAAGCTTGTTTCCAGCCACAGATGCTAAATGACATATACACTATCTAAGATGTATATAATGTCTAAGGTCAAAGCAACTGCTCCCAGAAACATTTGAGCTGTGGTGATCATGCGGGAAACTTTGAATCCGGACATTTGTTTGCGGATCTCTCTTCTTTTACCAAGAATGTTTATCTTAATCTACTATCTATGACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU192868 lncRNA upstream 116928 2235008 ~ 2304098 (+) True G169760
TU192880 lncRNA upstream 161222 2243834 ~ 2259804 (+) True G169768
TU192782 lncRNA upstream 238881 2170179 ~ 2182145 (+) True G169686
TU192788 lncRNA upstream 254100 2166484 ~ 2166926 (+) True G169692
TU192802 lncRNA upstream 307694 2109522 ~ 2113332 (+) True G169706
TU193025 lncRNA downstream 52749 2476276 ~ 2477466 (+) True G169906
TU193050 lncRNA downstream 83118 2506645 ~ 2509031 (+) True G169922
TU193043 lncRNA downstream 86252 2509779 ~ 2510694 (+) True G169921
TU193058 lncRNA downstream 125107 2548634 ~ 2588029 (+) False G169927
TU193056 lncRNA downstream 161445 2584972 ~ 2588029 (+) False G169927
CI01000034_02275470_02281951.mRNA mRNA upstream 138422 2274601 ~ 2282604 (+) True CI01000034_02275470_02281951
CI01000034_02256162_02260170.mRNA mRNA upstream 160562 2255765 ~ 2260464 (+) True CI01000034_02256162_02260170
CI01000034_02231423_02231755.mRNA mRNA upstream 188902 2231303 ~ 2232124 (+) True CI01000034_02231423_02231755
CI01000034_01900645_01947187.mRNA mRNA upstream 473839 1900645 ~ 1947187 (+) True CI01000034_01900645_01947187
CI01000034_01872601_01880795.mRNA mRNA upstream 540231 1872601 ~ 1880795 (+) True CI01000034_01872601_01880795
CI01000034_02550332_02552258.mRNA mRNA downstream 126805 2550332 ~ 2552839 (+) True CI01000034_02550332_02552258
CI01000034_02563086_02564052.mRNA mRNA downstream 139411 2562938 ~ 2564172 (+) True CI01000034_02563086_02564052
CI01000034_02662209_02664649.mRNA mRNA downstream 238682 2662209 ~ 2665540 (+) True CI01000034_02662209_02664649
CI01000034_02688043_02705526.mRNA mRNA downstream 264418 2687945 ~ 2705564 (+) True CI01000034_02688043_02705526
CI01000034_02770255_02774341.mRNA mRNA downstream 346572 2770099 ~ 2774567 (+) False CI01000034_02770255_02774341
TU192920 other upstream 83336 2317973 ~ 2337690 (+) True G169806
TU192663 other upstream 689849 1726510 ~ 1726632 (+) True G169586
TU192378 other upstream 1110148 1250219 ~ 1310878 (+) True G169340
TU192449 other upstream 1227466 1150297 ~ 1193560 (+) True G169394
TU192400 other upstream 1302007 1103540 ~ 1119019 (+) True G169357
TU193348 other downstream 1010609 3434136 ~ 3451849 (+) True G170172
TU193699 other downstream 1701573 4125100 ~ 4126811 (+) True CI01000034_04125435_04125780
TU193723 other downstream 1771111 4194638 ~ 4194993 (+) True G170522

Expression Profile