RNA id: TU192880


Basic Information

Item Value
RNA id TU192880
length 399
lncRNA type sense_over
GC content 0.51
exon number 2
gene id G169768
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 2243834 ~ 2259804 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGGTGTGTTTGGTGAATTCATGGATGACGCCACTGATCTTCTCTGCCTCTGAAGTTTTCCAAGTAGCAGGGAAAGATGCTTTTTGGATAAACCTCAGCGTTCAACCTCTGGTTCGCCTGGTTTCAGAGGCAAGGTGCCGCAAGACACCGAGTTCTAAAGGGGGTCCTCGGCGTCAGCCATGACTGTAGACCTCACGGGGAGGGCTGTGATGGCCACTGGTGCCAGCTGAACACCCTCACTGATACTTGTTGTCGTTCCGCGCGCCGTCACAGCCCGTCTTATTTCAGCGCCTGTCTTCCACTTTATCACTTTTGCAAAGCTATTTTCCTCCCCTGTTCATGAAAAGTACAATTTTTCCTGTCTCAACTCTCTTTCCTCCATATTTGCAGCTTCTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192782 lncRNA upstream 61689 2170179 ~ 2182145 (+) True G169686
TU192788 lncRNA upstream 76908 2166484 ~ 2166926 (+) True G169692
TU192802 lncRNA upstream 130502 2109522 ~ 2113332 (+) True G169706
TU192794 lncRNA upstream 149217 2091899 ~ 2094617 (+) True G169698
TU192792 lncRNA upstream 153186 2090405 ~ 2090648 (+) True G169696
TU193025 lncRNA downstream 216472 2476276 ~ 2477466 (+) True G169906
TU193050 lncRNA downstream 246841 2506645 ~ 2509031 (+) True G169922
TU193043 lncRNA downstream 249975 2509779 ~ 2510694 (+) True G169921
TU193058 lncRNA downstream 288830 2548634 ~ 2588029 (+) False G169927
TU193056 lncRNA downstream 325168 2584972 ~ 2588029 (+) False G169927
CI01000034_02231423_02231755.mRNA mRNA upstream 11710 2231303 ~ 2232124 (+) True CI01000034_02231423_02231755
CI01000034_01900645_01947187.mRNA mRNA upstream 296647 1900645 ~ 1947187 (+) True CI01000034_01900645_01947187
CI01000034_01872601_01880795.mRNA mRNA upstream 363039 1872601 ~ 1880795 (+) True CI01000034_01872601_01880795
CI01000034_01862099_01867869.mRNA mRNA upstream 375965 1862099 ~ 1867869 (+) True CI01000034_01862099_01867869
CI01000034_01858418_01860499.mRNA mRNA upstream 382749 1858418 ~ 1861085 (+) False CI01000034_01858418_01860499
CI01000034_02275470_02281951.mRNA mRNA downstream 14797 2274601 ~ 2282604 (+) True CI01000034_02275470_02281951
CI01000034_02421189_02423360.mRNA mRNA downstream 161222 2421026 ~ 2423527 (+) True CI01000034_02421189_02423360
CI01000034_02550332_02552258.mRNA mRNA downstream 290528 2550332 ~ 2552839 (+) True CI01000034_02550332_02552258
CI01000034_02563086_02564052.mRNA mRNA downstream 303134 2562938 ~ 2564172 (+) True CI01000034_02563086_02564052
CI01000034_02662209_02664649.mRNA mRNA downstream 402405 2662209 ~ 2665540 (+) True CI01000034_02662209_02664649
TU192663 other upstream 512657 1726510 ~ 1726632 (+) True G169586
TU192378 other upstream 932956 1250219 ~ 1310878 (+) True G169340
TU192449 other upstream 1050274 1150297 ~ 1193560 (+) True G169394
TU192400 other upstream 1124815 1103540 ~ 1119019 (+) True G169357
TU192338 other upstream 1273913 969261 ~ 969921 (+) True G169309
TU192920 other downstream 58169 2317973 ~ 2337690 (+) True G169806
TU193348 other downstream 1174332 3434136 ~ 3451849 (+) True G170172
TU193699 other downstream 1865296 4125100 ~ 4126811 (+) True CI01000034_04125435_04125780
TU193723 other downstream 1934834 4194638 ~ 4194993 (+) True G170522

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049920 True 862 lncRNA 0.39 2 NC_007114.7 22854673 ~ 22880447 (+)
mexican tetra (Astyanax mexicanus) TU458383 False 502 lncRNA 0.58 3 NW_019172924.1 2690190 ~ 2796768 (+)