RNA id: TCONS_00015530


Basic Information

Item Value
RNA id TCONS_00015530
length 1035
RNA type mRNA
GC content 0.47
exon number 8
gene id XLOC_007953
representative True

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 31476973 ~ 31489410 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCATGCCGTTCCCATTTGGGAAGTCTCAAAAGAGCCCTGCAGAGATTGTAAAGAGTCTGAAGGAGAATGTGGCATACTTGGAGAAGCTGGAATCATCTGAAAGCAAGAAATGTGAAAAGGTTGCAGAGGAAGTATCTAAAAATCTCTCGTCGTTGAAAGAGGTGCTGTGTGGCACCGGAGACAAGGAGCCTCAGACCGAAGCAGTGGCCCAACTGGCTCAAGAGCTCTACAACACCAACCTCCTCATTTCCCTCATAGCAAATCTACAGAGGATTGATTTCGAGGGAAAGAAGGATGTGGTGCATCTGTTTAGCAACATAGTACGTCGCCAGATTGGTGCTCGCACGCCGACTGTGGAGTACATCTCTTCTCACTCACAAATCCTCTTTATGCTGCTGAAAGGCTATGAAACTTCAGAAGTGGCTCTAAACTGCGGAATGATGCTGAGGGAGTGTCTGCGTCATGATCCTCTTGCCCGAATCGTTCTGTTCTCTGAGGATTTCTACTGCTTCTTCCGCTATGTGGAGATGTCTACCTTTGACATTGCCTCTGATGCTTTTGCATCATTTAAGGATCTCCTGACAAGACACAAGATCATGTGTGCTGACTTCTTGGAGACAAATTACGACAGAGTGTTCACAGAGTATGAAAAGCTGCTGCATTCTGAAAATTATGTCACCAAGCGCCAGTCTCTGAAGCTCTTGGGAGAACTACTGCTGGACAGACACAACTTCACAGTCATGACCAAATACATCAGTCGAGCTGAGAACCTAAAGCTGATGATGAATATGTTGAGAGACAACAGCCGCAACATCCAATTCGAAGCCTTCCACGTCTTTAAGGTGTTTGTGGCAAACCCCAATAAGACACAGCCTGTGCTGGACATCCTCCTCAAGAATCAGTCCAAGCTGGTGGAGTTCCTGAGCCACTTTCAAACGGACCGTTCTGAAGACGAGCAGTTCTGTGATGAGAAGAACTATCTCATTAAGCAGATCCGGGACCTCAAACGGCCTGCACCGGCAGAGGAGTCCTAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005575 cellular_component cellular_component
GO:0043539 protein serine/threonine kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2897 Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000186246

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016413 lncRNA downstream 10614 31466606 ~ 31469460 (-) False XLOC_007952
TCONS_00016412 lncRNA downstream 10794 31466606 ~ 31469280 (-) False XLOC_007952
TCONS_00015520 lncRNA downstream 420856 31013301 ~ 31059218 (-) True XLOC_007947
TCONS_00015512 lncRNA downstream 511908 30967444 ~ 30968166 (-) True XLOC_007945
TCONS_00015496 lncRNA downstream 594758 30884428 ~ 30885316 (-) True XLOC_007940
TCONS_00015535 lncRNA upstream 127777 31615877 ~ 31616734 (-) False XLOC_007956
TCONS_00015537 lncRNA upstream 145046 31633146 ~ 31635433 (-) True XLOC_007957
TCONS_00015552 lncRNA upstream 370318 31858418 ~ 31860637 (-) False XLOC_007959
TCONS_00016414 lncRNA upstream 370318 31858418 ~ 31862694 (-) False XLOC_007959
TCONS_00016415 lncRNA upstream 393182 31881282 ~ 31889260 (-) True XLOC_007963
TCONS_00015523 mRNA downstream 14169 31176952 ~ 31465905 (-) True XLOC_007950
TCONS_00015522 mRNA downstream 328926 31090151 ~ 31151148 (-) True XLOC_007949
TCONS_00015521 mRNA downstream 392244 31081862 ~ 31087830 (-) True XLOC_007948
TCONS_00015518 mRNA downstream 419992 30993310 ~ 31060082 (-) False XLOC_007947
TCONS_00015532 mRNA upstream 62659 31550759 ~ 31562795 (-) False XLOC_007955
TCONS_00015534 mRNA upstream 127477 31615577 ~ 31618243 (-) False XLOC_007956
TCONS_00015536 mRNA upstream 127976 31616076 ~ 31619408 (-) True XLOC_007956
TCONS_00015538 mRNA upstream 180410 31668510 ~ 31715412 (-) False XLOC_007958
TCONS_00015539 mRNA upstream 185550 31673650 ~ 31715373 (-) False XLOC_007958
TCONS_00015528 other downstream 12614 31467376 ~ 31467460 (-) True XLOC_007952
TCONS_00015527 other downstream 12814 31467167 ~ 31467260 (-) False XLOC_007952
TCONS_00015526 other downstream 12944 31467026 ~ 31467130 (-) False XLOC_007952
TCONS_00015525 other downstream 13292 31466671 ~ 31466782 (-) False XLOC_007952
TCONS_00015524 other downstream 153357 31326601 ~ 31326717 (-) True XLOC_007951
TCONS_00015531 other upstream 33830 31521930 ~ 31522007 (-) True XLOC_007954
TCONS_00015533 other upstream 63116 31551216 ~ 31559145 (-) True XLOC_007955
TCONS_00015548 other upstream 367492 31855592 ~ 31857336 (-) False XLOC_007959
TCONS_00015549 other upstream 367492 31855592 ~ 31862717 (-) False XLOC_007959
TCONS_00015555 other upstream 371330 31859430 ~ 31859506 (-) True XLOC_007960

Expression Profile

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