RNA id: CI01000053_00629840_00639156.mRNA


Basic Information

Item Value
RNA id CI01000053_00629840_00639156.mRNA
length 499
RNA type mRNA
GC content 0.52
exon number 4
gene id CI01000053_00629840_00639156
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 629713 ~ 639171 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTAGTGTCATGGCATGGTAATGCTCTATTTTGATGCAGGGTGCCAGGGGAAAGCTCTTAATCTCGTGAAGGAGCAGTTGGAGAGAAAGCTTTGTGTGCATACAAAAGTAGACGAGCGCAGCTCAGGCGGAGCGCAGAGACTGAATCTATATCCAGTAAAATCCAGTAAACATGAGGCTTTGAGCTCCTTCACCACCAACAGATTAAGCGCAAATCCACCCAAAGCAGGCCCTGAACAAAACAAGGCCTTGTTCAAGCTGAAGTTGGTCCTCCTGCTGGGACGTAGCTGTGATTTGCGACTCCTCAGCGGGACGTGGATCTTCGGCGTGCCAGCGCCGCTGAGAAAAACAGTTTCAGCTTCCTTCTTCTGACTGCACGCACTGGGACACCGATTGGCAGATGAATATGCGAGTGGCCGCGACACCTTCCTTCGCCCCTCGGAGGGCGTTCGATCTGTGGGACTGGAGGCAGATGTGTGGGCTCAAGTTGAAAAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255941 lncRNA downstream 58456 571056 ~ 571257 (-) True G225622
TU255939 lncRNA downstream 73654 552476 ~ 556059 (-) True G225620
TU255884 lncRNA downstream 102183 526117 ~ 527530 (-) True G225570
TU255885 lncRNA downstream 103768 524494 ~ 525945 (-) True G225571
TU255925 lncRNA downstream 136424 493053 ~ 493289 (-) True G225606
TU255990 lncRNA upstream 108210 747381 ~ 747619 (-) True G225665
TU255993 lncRNA upstream 110080 749251 ~ 749495 (-) True G225668
TU255876 lncRNA upstream 168996 808167 ~ 809734 (-) True G225563
TU255872 lncRNA upstream 174457 813628 ~ 814240 (-) True G225561
TU256003 lncRNA upstream 177233 816404 ~ 816668 (-) True G225678
CI01000053_00496924_00507195.mRNA mRNA downstream 122518 496723 ~ 507195 (-) True CI01000053_00496924_00507195
CI01000053_00454429_00457235.mRNA mRNA downstream 172478 454412 ~ 457235 (-) True CI01000053_00454429_00457235
CI01000053_00432322_00449797.mRNA mRNA downstream 179916 432269 ~ 449797 (-) True CI01000053_00432322_00449797
CI01000053_00390989_00410148.mRNA mRNA downstream 219565 390799 ~ 410148 (-) True CI01000053_00390989_00410148
CI01000053_00379771_00382260.mRNA mRNA downstream 247453 379709 ~ 382260 (-) False CI01000053_00379771_00382260
CI01000053_00647818_00652652.mRNA mRNA upstream 8537 647708 ~ 652719 (-) True CI01000053_00647818_00652652
CI01000053_00656235_00664346.mRNA mRNA upstream 16280 655451 ~ 664346 (-) True CI01000053_00656235_00664346
CI01000053_00667421_00672829.mRNA mRNA upstream 27904 667075 ~ 674421 (-) True CI01000053_00667421_00672829
CI01000053_00678066_00685960.mRNA mRNA upstream 38761 677932 ~ 687806 (-) True CI01000053_00678066_00685960
CI01000053_00696659_00703507.mRNA mRNA upstream 57191 696362 ~ 703507 (-) True CI01000053_00696659_00703507
TU255892 other downstream 82845 543647 ~ 546868 (-) True G225574
TU256158 other upstream 820424 1459595 ~ 1466732 (-) True G225812
TU257051 other upstream 1578277 2217448 ~ 2237396 (-) True G226536
TU257358 other upstream 1926721 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 2357546 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 2911162 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU156286 False 1311 lncRNA 0.49 3 NC_056713.1 11849854 ~ 11855895 (-)