RNA id: CI01000053_00667421_00672829.mRNA


Basic Information

Item Value
RNA id CI01000053_00667421_00672829.mRNA
length 4185
RNA type mRNA
GC content 0.42
exon number 5
gene id CI01000053_00667421_00672829
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 667075 ~ 674421 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGTTTAATTGCGAAAAATATATATTTAATATGCAAGCAATGAGCAGTGTTTATTCTGTATTTCAACTCCATTGCAGAGATCCTGTTTTGTAGTCTGTATAACACGGTAAAATGTGATTTTATGATAATATATTTTAGCGTCTCTACGCGTGACATTTAGCTGTTTCAATGGCCTATTTATCGAAGAGATTATTAGTGATTAGAATCCGGAATCGGTTCTTTTGAACAATTCGCTTCAAAGAATCGGTTCAGATTCTGTGATTCTTTACGTCATGACGTAGTTACGAAACCTCACGGTCCATTCCGGCATATTTAAAGAGTAATTTGACAACTCATTTTAAATAATACTGGAGTCTTCAGAATTGAGGTATTCAAACGATGTGTTAAATATAAATCCTACAGCACTGTGGTTTTAGAGACTACTGATTTACATTTAGGGTTCGGGGTAGGTTTAGTAGCCTAGCTACCTCTAAAGATTGTATAAATGAATAATAGATAATGTGTAATCATTGTAGCTATATCAACATTGTTCTCGATTGTCACTGAATGTGAGAGGCTGCTCACTGCAGAGCCAATGGGTGGAGCTTGACGTCCAGCTCCCTCAGAGCCGTTGAAAAACATTTAACGGCTCTGAGCTCCCACCCCCTGGTCGTTAGAGGTGGAGCTTTGCGGTCGAGCCACACCCTTACCCTATCCATAACCCTATCCCTAAACTTAATTTAAGTCAAGCTCCACCCATTACATCCCATGGAGCTGAAAGTCATTTGGCTCTGCAGTGAGAAAGAGGAGCTTTTAATTAAAAATACCCGGTCTTTGCTGCCATCTACAGGATTCACGACTTTAATGAGCGCGAAGGGAGAGGATCCTGTCACAAGATCTGAACAAGTATTGATAATGAAGCTATGGAGACCGAAAAACTATTATTTCAAATCCAAGTATTTATTTATTTAGATATGAGGCTGCGTAAAAGCTGCATGAAGATTATTCAATATAGTGTTCCGATTTGCTTTAAACTACAACAATAAACAAATGAACTAAATTGAACTAAATAATGAGACTGTATTTATTATCTGTAAGATGAGTTTTATAAACTGTTAAAAATGTAGAAAGATTAACCTTAGAATTGTGTATTGTTGTTGTTATTTTATTTTATTACATTTTTGAGGTAAAATATAAATAGTAAAAAGTAGACAAAAAGAAAATGTAAAAGCACAGACCCTACCAAATCTAACATCCGCGATTAAAAAAAAATATAAAAATGCACATAGCATAGTTGGCCTGAATTCAACCAATGAGATAAGAGCTTTTGACTCGAGAACCGTTTGGAACGATTCAGGCCGCTTTTGTGAATCGGTTCAAAAGATTCATTAAACGATCTGACTCAAAAGATCGATTCGTAAATCGCTCTTGCTTTCAGTATGGCTGGTGCATTGTGGGATCGAAACGAATTGCATTGTGGGTTGGCACGCCAACAATACTAGTGCTTCATACTTGCGCGCCTTGTTTATTTCTGTAATGTTGCAATGATTATATTAATTACATCATAAATAATAAGAGTGTAGAAAGGTTTTTGTCAGACATTCAATGCACAATGCCAAATTTTTGTGCCGCTCCGAACTGTACCAGGAAAAGCACTCAGTCCGATTTAGCTTTCTTTAGGTTTCCAAGGGATCCGGAGAGATGTAGGTTGTGGGTGGAGAACTGTCGGCGTGCAGATCTGGAGGAGAAAACTCCTGATCAGCTGAACAAGCACTACCGGCTGTGTGCAAAGCACTTTGAACCAGCCATGATATGCAAAACTAGCCCTTACAGGACAGTACTAAGGGACACTGCTATTCCCACGATTTTTGATTTAACCAGCCACCTCGCAAATCCTCACAGCAGACATCGCAAACGCATCAAAGTTCTGACAGATGAAGAGGTTCGGAAAATCAAAGAAAGACGATTGGAGTCTTCGATTGAACAACTGCTCTCGAAAAAAGACTGTGACTCTCAGGATGACAGCGAGAACACAGATGACGTCCCTCAGCTTACGCCCGAACAAAAAGACCTAAGAGAGTTCTTAAGATCTTCGTTTGAAGTCATGGTTTTGATAGGAAGGCAAAACTTTCCATTCAGTTGCAATGCAAGAGAAGATGAGATCCGCTCTAAGGAGGAGGAACGCCTCTTTAGCACAGGTACCTTTCAAGCGCTGATTGAGAACCGTATCAATGCGGGCGATGAATTTCTTCGAAGGAGGTTCGAGGCAGTGGCTGTTAATGAGGACTATTGCCCGGCCGTTCAGCAGAGGCAGATGCTGGAGGTCTGCGAGAGATGCGTGCGTGAAGAGATCCTTCAACAAGTCCGAGAATGTCGCTTCTTTTCGATCATCACAGGGGAGTTAGTGGACTTCCCAGAGGGAGAACACCTGCCTGTATTCCTGCGCTTTGTAGACCAAGCCAACACTCTTAGAGAAGAGTTCATAGAGTTCCTCTCATTTGAAGGAGAGGAGGTTGCTGTCGCTGAGAGATTGGAGTCTCAGTTGACGAAGGGATGGGGCCTGAGTATGGAACACTGCAGAGGACAAGCGTATGCGGGATCTGGTATACTTGGGACTAAGATGAAGGTCATCGCTGCCCACCTCAAGGAGAAATATCCCATGGCGGTGATCACGCCCACTTCCACCTGTGCACTTAATGTTCATCTCGCTAATGGCATGCCGCTGACTGGAGTGCAAGTTGTGATATCAGTTCTGAAAAAGACAAATGTGTTTTTTAAAACATCTCCATTGTTGCAGACCGAACTCGATAATGCTATCTCCATTCTGTGTCAAGGAAACATGGAAAAAGAAAATGCTCTCAAAGAGGGCTCGCGTTCAACCTGGACCGATCTTCATAATGTGTTCGAGATGGCTGTCGATTTGATGGAGCCACTTCTGCTGTGCATGGACAGCATACATGACAATGAGGATCTGAAGTGGAACGACCAAGTCACCAATGATGCTTACGCCATTTCAGAGGCCTTGGCGGACTTTGAGTTCATCGTGACGTTGGTTATTTTGAAGAACGCCCTGTCTTTCACGAGGGCTTTTGGTAAGAACTTACAAGGAGAAACCATTGATGTGTTTTTTGCTGCCAACAGCCTAACAGCAGTACTGCATTCATTGCACGAGGTAACGGACAATCTGGAAGTATACCACGAATTCTGGTTCGAAGAGGCTGTTAGTTTGGCGACTGCAATGGAGATCCCGGTCAAAGTCCCGAGGTTGTTTCTTCGGAAGCAACAGGCAGTGGAGACCATGGAAATACAGGCGGAGTCGTTCTTTAAAGAGTATCTGACGCAGCCGGTTATGGAGTACATCACACAAGAGGTCAAGGACATCTTCTCGGAGAATCATCTCAAGGCGCTCAAGTGCTTGTCTCTTGTCCCCGCAGTCATGGGCCAAATGAGGTTCAATACCTCTGAGGAGTCACATGCAGACATTTACAGGAGCGATCTGCCGCATCCGGACACATTGCCGGCTGAACTGCATTGTTGGAGAATAAAATGGAAACACAGAGGAAAGGAAGTAAGCTTGCCGTGCACCATTCACGAAACCCTTCAGCACTCCGATGTGAAGTTCTTCCCAAATGTTAATGCGTTTTTGAAAATATTAGCCACGTTGCCGGTGCTGAAGCTTGATGGGAGTCACGGTGAAACTGCCCAAAGACGGTTACAAGCTTACCTCACAGACACTGCGGTAAACCAAAGGTGTAAGAATCTAGCTGTGCTGAACATCAATTACCATATAAAGACAGACCTGGAAGAAATGGTTCAGTGTTATATAAAAAGTTACCCAGAAGAAAGTGAGAGTGATTAACCACTAAAACATATAGACTCTCCAAGTATCGACTGCAAAAATATTTGAGCTGGAAATGTAATAAGTTCTGTACTGTTTTGTAAGTTCCCTTTGCTTTTTGTCATGATGCCAATTGTTTATTTTGTGTCTTCCCCCCCCCCCCCTGGAGATATATAGTACTATTTTTACATTTGTGAGGACCGTCAAAAAGATTCACCATGTACGATTTTACACAGTGGTCTTGCATTGTTTTGTTTGCTTGACTGTCTAGTGTGAAGCTGGACTGATAAAAGACAAAATTGACATTGAAATTCAACTATTAAAGACAAGTTTGTGTTTGTATAAACTGGTCCAAAGTGTAAATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255941 lncRNA downstream 95818 571056 ~ 571257 (-) True G225622
TU255939 lncRNA downstream 111016 552476 ~ 556059 (-) True G225620
TU255884 lncRNA downstream 139545 526117 ~ 527530 (-) True G225570
TU255885 lncRNA downstream 141130 524494 ~ 525945 (-) True G225571
TU255925 lncRNA downstream 173786 493053 ~ 493289 (-) True G225606
TU255990 lncRNA upstream 72960 747381 ~ 747619 (-) True G225665
TU255993 lncRNA upstream 74830 749251 ~ 749495 (-) True G225668
TU255876 lncRNA upstream 133746 808167 ~ 809734 (-) True G225563
TU255872 lncRNA upstream 139207 813628 ~ 814240 (-) True G225561
TU256003 lncRNA upstream 141983 816404 ~ 816668 (-) True G225678
CI01000053_00656235_00664346.mRNA mRNA downstream 2729 655451 ~ 664346 (-) True CI01000053_00656235_00664346
CI01000053_00647818_00652652.mRNA mRNA downstream 14356 647708 ~ 652719 (-) True CI01000053_00647818_00652652
CI01000053_00629840_00639156.mRNA mRNA downstream 27904 629713 ~ 639171 (-) True CI01000053_00629840_00639156
CI01000053_00496924_00507195.mRNA mRNA downstream 159880 496723 ~ 507195 (-) True CI01000053_00496924_00507195
CI01000053_00454429_00457235.mRNA mRNA downstream 209840 454412 ~ 457235 (-) True CI01000053_00454429_00457235
CI01000053_00678066_00685960.mRNA mRNA upstream 3511 677932 ~ 687806 (-) True CI01000053_00678066_00685960
CI01000053_00696659_00703507.mRNA mRNA upstream 21941 696362 ~ 703507 (-) True CI01000053_00696659_00703507
CI01000053_00733357_00737206.mRNA mRNA upstream 58894 733315 ~ 737327 (-) True CI01000053_00733357_00737206
CI01000053_00739813_00746803.mRNA mRNA upstream 65241 739662 ~ 747031 (-) True CI01000053_00739813_00746803
CI01000053_00797990_00802827.mRNA mRNA upstream 123286 797707 ~ 803060 (-) True CI01000053_00797990_00802827
TU255892 other downstream 120207 543647 ~ 546868 (-) True G225574
TU256158 other upstream 785174 1459595 ~ 1466732 (-) True G225812
TU257051 other upstream 1543027 2217448 ~ 2237396 (-) True G226536
TU257358 other upstream 1891471 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 2322296 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 2875912 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016894 True 2559 mRNA 0.45 5 NC_007126.7 19900197 ~ 19908909 (+)