RNA id: CI01000053_00733357_00737206.mRNA


Basic Information

Item Value
RNA id CI01000053_00733357_00737206.mRNA
length 1354
RNA type mRNA
GC content 0.49
exon number 10
gene id CI01000053_00733357_00737206
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 733315 ~ 737327 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACAGTCACTTTGAGACGATAAAGGATCTTTAACAGTAAGGATACCTTCAAGATTTTCTCTGGAGTGCTGAGAGTCATTTATTGGTCGTTTTTGGACATTTATGAAGAGCAAATAGCTGACATGGTTCTACTCAGCCTCTTGATTTTGGGTGCGATGGTTCAAGGCCACCTGGCTCTTTCTGGTTCTGACTGTGGAACTTCCTTCAGGCGTCCAGAGTACACCGACATCGCAGTGTATTGTGGGACTGAATCTATAAATTTGGCAATCCAGGTTTGCCCGGTCATTTACACTGGCTATAACGAGTCCTTGTTGATTCTGAATCAAATTGCAAATGATCCGCTGTGTCGAGGAACGCTGGATGCGACTGCGACTCCTCCAGTCGTGCGCTTCAGTTTTCCTCTCAGGCAATTAGACGCCTGCGGCAGCATCTTCCGCACCACCAGCGCTCCAGGGACCGGGGTCTTCTCGGACTTCTCTAACATCCAGACGGTCAACATCAGTGGGGTGGTCAGATCTTTCGACCCCACAACAGGAACAGTGACCTACAACGCCGAGCTGAAGTATTTTTACTCCTGTGCATATCCACTCGAGTACCTGATCAACAATACACAAGTTGATGTGTCATCCTCCTCCATTGCAGTGAAGGACAACAATGGAAGCTTCATCAGCACTTTAAGCATGCAGCTCTTCAAAGATGAAAACTACACTACTCCACTCATTATCCCTTCTATTGGCATTGAGCTCAGAACCAGAATCTATGTGCAAGTCATAGCAGCAAACCTGACTTCACAGTATCATGTTCTACTGGATCGATGCTACGCCTCTATCTCAGCCCTACCCTCCAATTCAACCTTTTTCAATCTGTTTGTCCCGTGCTCGAAGGATCTGTTCACCACCATGTTGGAGAATGGAAACAGTCAGAGGGCTCGCTTCAGCTTCCCAGCCTTCCGCTTTATCGAGCAGCAGAACCAGACCCTTTCCACCTACTACCTCCATTGCATCACCAGGCTTTGTGAAACCAGCACCTGCGCCCAGTTCAAGCAATGCAACGTGAGGGTGAGACGAGACGTACAGACAACGACAATTAAAGATGGTCTCTCAGACACCACTCTCATCACCTCAGGACCTATTAGGACTCAAGCGGACACCCCTCTTACTACTAAGGAACAAGCCCTGAGCAGTGCACAGAAGGACAGTGGTAATGGGGCGTCTGTAGGACTGGGTGTTGCTCTGGCTGTCCTCGTCATTGTGGGCACCGTTGCCGCCCTCATGGCCGTGTCATTTTACCGCAAACTCAGGATGCTACGTTAACTGTCCACGATCCCAGAGCTCTTTTCACGTAGGACAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255941 lncRNA downstream 162058 571056 ~ 571257 (-) True G225622
TU255939 lncRNA downstream 177256 552476 ~ 556059 (-) True G225620
TU255884 lncRNA downstream 205785 526117 ~ 527530 (-) True G225570
TU255885 lncRNA downstream 207370 524494 ~ 525945 (-) True G225571
TU255925 lncRNA downstream 240026 493053 ~ 493289 (-) True G225606
TU255990 lncRNA upstream 10054 747381 ~ 747619 (-) True G225665
TU255993 lncRNA upstream 11924 749251 ~ 749495 (-) True G225668
TU255876 lncRNA upstream 70840 808167 ~ 809734 (-) True G225563
TU255872 lncRNA upstream 76301 813628 ~ 814240 (-) True G225561
TU256003 lncRNA upstream 79077 816404 ~ 816668 (-) True G225678
CI01000053_00696659_00703507.mRNA mRNA downstream 29808 696362 ~ 703507 (-) True CI01000053_00696659_00703507
CI01000053_00678066_00685960.mRNA mRNA downstream 45509 677932 ~ 687806 (-) True CI01000053_00678066_00685960
CI01000053_00667421_00672829.mRNA mRNA downstream 58894 667075 ~ 674421 (-) True CI01000053_00667421_00672829
CI01000053_00656235_00664346.mRNA mRNA downstream 68969 655451 ~ 664346 (-) True CI01000053_00656235_00664346
CI01000053_00647818_00652652.mRNA mRNA downstream 80596 647708 ~ 652719 (-) True CI01000053_00647818_00652652
CI01000053_00739813_00746803.mRNA mRNA upstream 2335 739662 ~ 747031 (-) True CI01000053_00739813_00746803
CI01000053_00797990_00802827.mRNA mRNA upstream 60380 797707 ~ 803060 (-) True CI01000053_00797990_00802827
CI01000053_00815725_00817893.mRNA mRNA upstream 78270 815597 ~ 817893 (-) True CI01000053_00815725_00817893
CI01000053_00830433_00864331.mRNA mRNA upstream 92871 830198 ~ 864373 (-) True CI01000053_00830433_00864331
CI01000053_00865420_00881846.mRNA mRNA upstream 128046 865373 ~ 881846 (-) True CI01000053_00865420_00881846
TU255892 other downstream 186447 543647 ~ 546868 (-) True G225574
TU256158 other upstream 722268 1459595 ~ 1466732 (-) True G225812
TU257051 other upstream 1480121 2217448 ~ 2237396 (-) True G226536
TU257358 other upstream 1828565 2565892 ~ 2567072 (-) True G226826
TU257528 other upstream 2259390 2996717 ~ 2997268 (-) True G226963
TU257615 other upstream 2813006 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016889 True 1208 mRNA 0.48 8 NC_007126.7 19797918 ~ 19803478 (+)