RNA id: TCONS_00016623


Basic Information

Item Value
RNA id TCONS_00016623
length 652
RNA type unprocessed_pseudogene
GC content 0.54
exon number 1
gene id XLOC_008246
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 2685055 ~ 2685706 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTTTCGGATTGGAGCTCGTGGGGATTATTCTATGTGTCTTAGGCTGGCTTTTGGCTATTGTGGCCTGTGCTATCCCGATGTGGAGGGTCACCGCCTTCATCGGCTCCAACATAGTGACCGCGCAGATCATCTGGGACGGTTTGTGGATGTCCTGCGTGGTTCAGAGCACCGGACAGATGCAGTGTAAAGTCTACGACTCCATGTTGGCTCTGTCCCAGGACCTCCAGGCGGCTCGAGCGCTGACCGTCATATCCATCCTTCTGACCGTCCTGGCCGTCTTAGTGTCCATCGGAGGAGCCAAATGCACAAACTGCATCGAGGAAGAGTCATCCAAAGCCAAAGTCATGATCTTCGGAGGGGTGCTCTTCATTTTGGCTGGTCTCATGCAGCTGATTCCCGTGTCCTGGTCGGCTAATAGTATCATCAGGGACTTTTATAACCCTTTGCTGCCTGATGCTCAGAGGCGAGAGATGGGTGCCGGGTTATACATTGGATGGGCCGCGGCCGCACTTTTAATTATGGGGGGATCCTTGCTTTGTTGCTCCTGCCCTCCTCAGGAGAAGAAATACAACCCGTCTAGGATGCCGTATCCCGCATCTCGCTCTACAGGTGGGGTAGGGTACGACAGAAGAGACTACGTGTGAAATA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000157036

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016615 lncRNA upstream 261444 2421835 ~ 2423611 (+) True XLOC_008240
TCONS_00018865 lncRNA upstream 966426 1693197 ~ 1718629 (+) False XLOC_008232
TCONS_00018866 lncRNA upstream 966426 1715361 ~ 1718629 (+) False XLOC_008232
TCONS_00018867 lncRNA upstream 966426 1715754 ~ 1718629 (+) True XLOC_008232
TCONS_00016601 lncRNA upstream 1016837 1661092 ~ 1668218 (+) True XLOC_008231
TCONS_00018868 lncRNA downstream 128364 2814070 ~ 2815714 (+) True XLOC_008247
TCONS_00018750 lncRNA downstream 159106 2844812 ~ 2855629 (+) True XLOC_008248
TCONS_00018751 lncRNA downstream 179918 2865624 ~ 2865929 (+) True XLOC_008250
TCONS_00018869 lncRNA downstream 200994 2886700 ~ 2887498 (+) True XLOC_008249
TCONS_00018870 lncRNA downstream 303085 2988791 ~ 2989951 (+) True XLOC_008251
TCONS_00016621 mRNA upstream 106916 2559875 ~ 2578139 (+) True XLOC_008244
TCONS_00016619 mRNA upstream 141221 2520319 ~ 2543834 (+) False XLOC_008243
TCONS_00016620 mRNA upstream 141496 2534740 ~ 2543559 (+) True XLOC_008243
TCONS_00016617 mRNA upstream 177067 2498496 ~ 2507988 (+) False XLOC_008242
TCONS_00016624 mRNA downstream 170990 2856696 ~ 2890101 (+) False XLOC_008249
TCONS_00016625 mRNA downstream 171850 2857556 ~ 2887313 (+) False XLOC_008249
TCONS_00016626 mRNA downstream 439430 3125136 ~ 3162586 (+) True XLOC_008252
TCONS_00016629 mRNA downstream 533428 3219134 ~ 3223448 (+) True XLOC_008254
TCONS_00016630 mRNA downstream 560769 3246475 ~ 3251221 (+) True XLOC_008256
TCONS_00016622 other upstream 10465 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016611 other upstream 326430 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016606 other upstream 811277 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016599 other upstream 1116713 1560665 ~ 1568342 (+) True XLOC_008228
TCONS_00016598 other upstream 1141112 1543857 ~ 1543943 (+) True XLOC_008230
TCONS_00016634 other downstream 820603 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016665 other downstream 3169405 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016677 other downstream 3873344 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016680 other downstream 3992815 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016681 other downstream 4084880 6770586 ~ 6772120 (+) True XLOC_008302

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000006_04262648_04264650.mRNA True 1246 mRNA 0.46 2 CI01000006 4262203 ~ 4264683 (-)