RNA id: CI01000053_06046867_06049295.mRNA


Basic Information

Item Value
RNA id CI01000053_06046867_06049295.mRNA
length 391
RNA type mRNA
GC content 0.51
exon number 4
gene id CI01000053_06046867_06049295
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 6046867 ~ 6049295 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATCCAGCCTATCCAGTGGACCTCTGACTGCAAGGATCAGAATTTTGATGGCATTATCTTGATAACCCAAAGTTTTGAGGAGCTCCCTGATGAGCTGGAGTGTTTGAAAGCACCATTACAGGACTACAGTGCAGTGGACTGTTGCTTCGGGGAAGAGGTCGTGGTTGTCAAGGCTCCTGGTCTCCCTGGAAACAGATTGGTGTTTGCCTGCACTGGTCCAGTGAATCGGGATTATGATGATGTCCGGCGGTTCAGTGACGCTGCTGCTAATGGCATTAAGAGGGCTCTGAAAACTGGCATGAAGCGTCCTCTGCTGGTTTGTCCCCCACATAACAGCTATGCAAAAAACACCCTGGCAGCCGTGCTGGGAGCCCTGCATGCTCTCTACATG

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01255 CARP, pepA; leucyl aminopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259665 lncRNA upstream 12088 6034553 ~ 6034779 (+) True G228823
TU259583 lncRNA upstream 114473 5932115 ~ 5932394 (+) True G228749
TU259572 lncRNA upstream 127111 5919485 ~ 5919756 (+) True G228739
TU259555 lncRNA upstream 155925 5890554 ~ 5890942 (+) True G228722
TU259549 lncRNA upstream 161929 5883465 ~ 5884938 (+) True G228716
TU259669 lncRNA downstream 26663 6075958 ~ 6076198 (+) True G228827
TU259678 lncRNA downstream 62173 6111468 ~ 6111943 (+) True G228836
TU259687 lncRNA downstream 75203 6124498 ~ 6124752 (+) True G228845
TU259691 lncRNA downstream 78988 6128283 ~ 6128592 (+) True G228849
TU259692 lncRNA downstream 79400 6128695 ~ 6128923 (+) True G228850
CI01000053_05976882_06023460.mRNA mRNA upstream 23176 5976882 ~ 6023691 (+) True CI01000053_05976882_06023460
CI01000053_05920285_05920932.mRNA mRNA upstream 125847 5920093 ~ 5921020 (+) True CI01000053_05920285_05920932
CI01000053_05818799_05861616.mRNA mRNA upstream 184995 5818799 ~ 5861872 (+) True CI01000053_05818799_05861616
CI01000053_05796556_05798076.mRNA mRNA upstream 247043 5795873 ~ 5799824 (+) True CI01000053_05796556_05798076
CI01000053_05784784_05786704.mRNA mRNA upstream 259209 5784266 ~ 5787658 (+) True CI01000053_05784784_05786704
CI01000053_06050344_06056286.mRNA mRNA downstream 1049 6050344 ~ 6056649 (+) True CI01000053_06050344_06056286
CI01000053_06095365_06103392.mRNA mRNA downstream 46070 6095365 ~ 6104033 (+) True CI01000053_06095365_06103392
CI01000053_06130926_06132991.mRNA mRNA downstream 81545 6130840 ~ 6133160 (+) True CI01000053_06130926_06132991
CI01000053_06148375_06153273.mRNA mRNA downstream 98387 6147682 ~ 6153805 (+) True CI01000053_06148375_06153273
CI01000053_06157492_06158741.mRNA mRNA downstream 108197 6157492 ~ 6159597 (+) True CI01000053_06157492_06158741
TU259080 other upstream 533793 5509244 ~ 5513074 (+) False CI01000053_05471449_05512831
TU259017 other upstream 668418 5375553 ~ 5378449 (+) True G228257
TU257989 other upstream 1631274 4414951 ~ 4415593 (+) True G227317
TU256881 other upstream 2349338 3620798 ~ 3697529 (+) True G226399
TU256803 other upstream 2771956 3272374 ~ 3274911 (+) True G226347
TU259751 other downstream 673904 6723199 ~ 6766877 (+) True G228900

Expression Profile