RNA id: CI01000053_05818799_05861616.mRNA


Basic Information

Item Value
RNA id CI01000053_05818799_05861616.mRNA
length 1141
RNA type mRNA
GC content 0.49
exon number 4
gene id CI01000053_05818799_05861616
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5818799 ~ 5861872 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTACAGCCAAGGAATGCTGCCGAGCAGTGGTCTACCATACCAGTCAAACATGACGGACATTGTGGACATAATATTTGAACAGTGGAAACCATGGAAACAGAGAGTCGCCGCTGAGGTGTTCAGCATGAGCAGAACTCATGTAGAGAACTATATAGTTTACTGGGTGCACTCAGACAAAAGCTTTCCATATGGGGGAAAGATAAGCGCCGCATACTTTCATGAAGTGCATAGACACAGCTCTTTCCACTCTGAGGCAGACAGGAATCTGGACAGGAGCAGACAGGAGCTATGCACCCACAGATCCCTGTTCCTCAGTCACCAGCAAGACTTGGGTTTCTGGGTTAACACTGGCAAGAGCTCGCTGCTTCCCAGCCAACAGATTCCATTCCTGGGAGCAGTCTTTGACTCAGCCCAAATTAAGGCTTGGCTCTCTCAGGAGTGCGCCTTAAAGATTAGGAGCTGTGTCAGAGCCCTGGTCCCTTGGAAATCGCTCCCACTTTTACCAAAACAGGGTGCTGCTGGGTTCAGTTGCCAGCACAGAGGGGTTGTGCCGGTCTTCTCCAATGGGTTCACGTGCCGGGCTCCTCGAATGTGGGAGCGGACATGCTGTCACGCGCCGGACCTTCCCTGGGCGGTCAAGGTGATATGGCGCGCCTTCGGTCAGGCGGATATGGACCTCTTTGTGACGAAAGAGAAATCCCACTTCCAAATTTATTTCTCGAAGGACATGGATGCACTGGCTCTGAAATGGCCATGTTGGCGCCTTTATGCCTTCCCTCCTATAACCCTGCTCCCGCAGGTCATCAGTCGGCTCATTCCCATTATCTTATGGAACCTTGGTTACAGAGCCACTTCTGGAATTAGTGCTGCTTTTTCTAAGTGACTTCCTCTGTTTAATTCTCTGCCTCTTCTTGTCTATAAATCTGGCAGCACTCTTACCCCTTCTTTTTTCCCCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTGTTGTCCAGTAAATCTGTTTCCAGTTCTGGAGATATGATTGCATCAACACAGAGTTCTTCTGGGAATTTTACACATATATATGAGACTCTCTCTGTCATCCGTAATTTGTTGAAGCTCCTGGTAATTTGCCTATAGAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259226 lncRNA upstream 48347 5770312 ~ 5770452 (+) True G228441
TU259222 lncRNA upstream 55790 5762052 ~ 5763009 (+) True G228439
TU259219 lncRNA upstream 61184 5757402 ~ 5757615 (+) True G228436
TU259204 lncRNA upstream 80548 5737817 ~ 5738251 (+) True G228425
TU259134 lncRNA upstream 89802 5717819 ~ 5728997 (+) True G228360
TU259549 lncRNA downstream 21593 5883465 ~ 5884938 (+) True G228716
TU259550 lncRNA downstream 21746 5883618 ~ 5883878 (+) True G228717
TU259555 lncRNA downstream 28682 5890554 ~ 5890942 (+) True G228722
TU259572 lncRNA downstream 57613 5919485 ~ 5919756 (+) True G228739
TU259583 lncRNA downstream 70243 5932115 ~ 5932394 (+) True G228749
CI01000053_05796556_05798076.mRNA mRNA upstream 18975 5795873 ~ 5799824 (+) True CI01000053_05796556_05798076
CI01000053_05784784_05786704.mRNA mRNA upstream 31141 5784266 ~ 5787658 (+) True CI01000053_05784784_05786704
CI01000053_05764395_05769061.mRNA mRNA upstream 49714 5764395 ~ 5769085 (+) False CI01000053_05764395_05769061
CI01000053_05704944_05710574.mRNA mRNA upstream 107678 5704848 ~ 5711121 (+) True CI01000053_05704944_05710574
CI01000053_05593016_05597420.mRNA mRNA upstream 221311 5593016 ~ 5597488 (+) True CI01000053_05593016_05597420
CI01000053_05920285_05920932.mRNA mRNA downstream 58221 5920093 ~ 5921020 (+) True CI01000053_05920285_05920932
CI01000053_05976882_06023460.mRNA mRNA downstream 115010 5976882 ~ 6023691 (+) True CI01000053_05976882_06023460
CI01000053_06046867_06049295.mRNA mRNA downstream 184995 6046867 ~ 6049295 (+) True CI01000053_06046867_06049295
CI01000053_06050344_06056286.mRNA mRNA downstream 188472 6050344 ~ 6056649 (+) True CI01000053_06050344_06056286
CI01000053_06095365_06103392.mRNA mRNA downstream 233493 6095365 ~ 6104033 (+) True CI01000053_06095365_06103392
TU259080 other upstream 305725 5509244 ~ 5513074 (+) False CI01000053_05471449_05512831
TU259017 other upstream 440350 5375553 ~ 5378449 (+) True G228257
TU257989 other upstream 1403206 4414951 ~ 4415593 (+) True G227317
TU256881 other upstream 2121270 3620798 ~ 3697529 (+) True G226399
TU256803 other upstream 2543888 3272374 ~ 3274911 (+) True G226347
TU259751 other downstream 861327 6723199 ~ 6766877 (+) True G228900

Expression Profile