RNA id: CI01000053_05764395_05769061.mRNA


Basic Information

Item Value
RNA id CI01000053_05764395_05769061.mRNA
length 975
RNA type mRNA
GC content 0.46
exon number 7
gene id CI01000053_05764395_05769061
representative False

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5764395 ~ 5769085 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCTTTTGCGTTTTTTTTCGGCTGGCTTTTGATTCTGGGTTCGTGCCCCAGGGTAAGGTCCTGTCTGCAGTGTGACACGGTGGTTCGTTATGTGCATGAAGATTTCCTGTCCTCAGTTAAAGGAATCACTGTCCGTGATCAAATTGAACTGAAGCAAATCATTGAGCACGCTTATGTCAACTATCGGGAGACCAGCACATCATTTCGTGGTGTCATAGATCCTACAACACTCTATCGTGCACGAACAGAATATCAGAGTGAATTCAAGAGGCACTGGAAAGAAGACAGCACAGGTCTGTGTCCAAATAAATGTGGGCTGCTGTATCAGAGAGTGATGAATTGCACTTCCTGTCAGTATGGTCTTTTTACATGTCTTTCAGCCACTCCACCACTAGACTGTGGAGAGCATCATCTTGAGGCAGATGAAGGAGAGGAGGTGGTGCTGGACTGTTTCCTGCCTTGGCATGCTCTTGTCATTGGACAGACCGAGTACCATTACTCCTGGCATCCTGAACAAAAAAATCTGTCACATGATGGGGAGAACGAACTGCTGGTGGTGACAGAGGAGTCTAAAATTGTACTAAATCAGCTGACAATCAGTGAGGAAGGCACCTACCGCTGCCTCCTACAGGATCAAAAGGGTACTGTGCTGTCACGCATGTATTTCAAACTGAAAGTGAAGCCACTGCCATCTACAACCCCTAGACTGATTGCGGTGTTGCCGTCACTGCCCCCGGGTTATGATGCCACACCTCGCCCTCATAAGAGCAGTTTCATCATTATACTGATTTTACTGACTGTACTCAGCATCACAGGCAGCCTTGTCATCATAGTGTACCTCAGGTATGTCATAACAGGATGGTTAGATGCACAGCAGTTTGGGCATATTAAAAAGGGGCTTTGTAATATACTTTGGGGGGAAAAAATAGCAAATGAGCCCAAAAAATAAAGACAGGAAAGAAAGAATGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259222 lncRNA upstream 1386 5762052 ~ 5763009 (+) True G228439
TU259219 lncRNA upstream 6780 5757402 ~ 5757615 (+) True G228436
TU259204 lncRNA upstream 26144 5737817 ~ 5738251 (+) True G228425
TU259134 lncRNA upstream 35398 5717819 ~ 5728997 (+) True G228360
TU259213 lncRNA upstream 51969 5712223 ~ 5712426 (+) True G228430
TU259531 lncRNA downstream 70740 5839825 ~ 5840071 (+) True G228698
TU259532 lncRNA downstream 71134 5840219 ~ 5840433 (+) True G228699
TU259549 lncRNA downstream 114380 5883465 ~ 5884938 (+) True G228716
TU259550 lncRNA downstream 114533 5883618 ~ 5883878 (+) True G228717
TU259555 lncRNA downstream 121469 5890554 ~ 5890942 (+) True G228722
CI01000053_05704944_05710574.mRNA mRNA upstream 53274 5704848 ~ 5711121 (+) True CI01000053_05704944_05710574
CI01000053_05593016_05597420.mRNA mRNA upstream 166907 5593016 ~ 5597488 (+) True CI01000053_05593016_05597420
CI01000053_05589379_05590208.mRNA mRNA upstream 173293 5588892 ~ 5591102 (+) True CI01000053_05589379_05590208
CI01000053_05563771_05573792.mRNA mRNA upstream 190430 5563771 ~ 5573965 (+) True CI01000053_05563771_05573792
CI01000053_05526931_05550454.mRNA mRNA upstream 213923 5526629 ~ 5550472 (+) True CI01000053_05526931_05550454
CI01000053_05784784_05786704.mRNA mRNA downstream 15181 5784266 ~ 5787658 (+) True CI01000053_05784784_05786704
CI01000053_05796556_05798076.mRNA mRNA downstream 26788 5795873 ~ 5799824 (+) True CI01000053_05796556_05798076
CI01000053_05818799_05861616.mRNA mRNA downstream 49714 5818799 ~ 5861872 (+) True CI01000053_05818799_05861616
CI01000053_05920285_05920932.mRNA mRNA downstream 151008 5920093 ~ 5921020 (+) True CI01000053_05920285_05920932
CI01000053_05976882_06023460.mRNA mRNA downstream 207797 5976882 ~ 6023691 (+) True CI01000053_05976882_06023460
TU259080 other upstream 251321 5509244 ~ 5513074 (+) False CI01000053_05471449_05512831
TU259017 other upstream 385946 5375553 ~ 5378449 (+) True G228257
TU257989 other upstream 1348802 4414951 ~ 4415593 (+) True G227317
TU256881 other upstream 2066866 3620798 ~ 3697529 (+) True G226399
TU256803 other upstream 2489484 3272374 ~ 3274911 (+) True G226347
TU259751 other downstream 954114 6723199 ~ 6766877 (+) True G228900

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00070359 False 1233 mRNA 0.44 9 NC_007119.7 40573137 ~ 40590816 (+)