RNA id: TCONS_00016717


Basic Information

Item Value
RNA id TCONS_00016717
length 1629
RNA type mRNA
GC content 0.41
exon number 8
gene id XLOC_008333
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 9861973 ~ 9873144 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAATTTTGCAAACGGTATGTCACGTCTTGCCCGCAACTGAccgaccaggggcctCTGGATATCATTGAGCTGGACCTAATCATCGCTTCAACGGCACTTGTGATTATCGTCAGCATAACAGCGATTCTTGTGCTTGGCACACTCATTTGGtgaGCTCAAGCAGATGGTGATCAATCCACACATTCCATAATCCCAGCAATAAAAGTCAAACAGTTATCAAAATGGACCAGAGGTTGTTACTGAGAGTCATCATCGCTGAAGATGATATAAGGAACATTGTCATCACCCACCACAACATCAGACACTGAGGGCAGCACAGCAGACACTGAGATCCTGTCGCCTGTAGGAGCATCACCATCGCTAAGACAACAGTGGCCAGAGTTCTTTGACATACCCAATTTCTCAGTAGATGTTGAGTGTTTGCTGAGTTTAATAGAATCGCCAGTAAGAATCTTGAGGGAGACTTCTTTGAGGCTCTGGACCAGTATGCCCCACGTTTCATTGaacttttcaaaacaaaaaagggAACTGTTGGCCAGAAACTCAGGGAGCTGATGCAGCACATGAGCTGGATGACACCAGACGTCACAGTACTTCGCTCTGTTGTCCTCAAAGGCATTCCCATTTTACTCGGTGATGACTCCAGTGAATTCTACAAGACCTGCTCTGATACAGAGAGAGACAAGGTCCTAGAATCCATCACTGTTGGTGTGCTGACAGTTGTCAGTGAAGATAATCCTCACGAGGGTCAAAGCTCAGTGGACCTCCAGCCCATCTCCACTGCCATCATTCTGGAGGGAGTTATTGTCATGGATCATATTAAAAACTTGCCTCAGGCAGTTTGTCTTTTGTTTGGTCTTACATATGCATTGCATTTGGATTACCCAAAATGCATGGCAAATACTCTCAACTTCATTCAGACTGTGATGCTTGGACTGGGAAAGAAAAACCTCCCACCAAAACTGTTAACTCTGAAGAACAGTCTTCTGGGTTAGAACAGTAAAGAGCCGTCGGCTGTCAGATAGCACTTTGTAAGCTTTGCAGCCATTAATGTTCTCCTCTTATCAGAGAAAGTTTGATGCTTTCATGCAACTGTTCTCACTTATTTACGTtctcaaaggaaaaaaaaagaatattccaTTAAAGTCTACCATGTTATGAAGGTATGCTAATGGTGGAAAtaatgccacgttgtgttgcaaTGAGTTGTTAGTTGTTTTTAGATGATAATGTCAGAAAATAACCTAGCAAGGTTATCCTGTTTACATTTGTGTTTTGGGAAAACTTTTCATAGTTGTAATGTAGTACAAACACAAACTCCAAGGAgtgatgtttttatttgtgttggtTTAATCCTTTGACTGCTCACTTTGGGAAACAAAAGCATTTGTTGTACTTTCGGTTTTGATCAGAAATGCACTGATTTTGCATGCACTGAAGTCATCCAGTAGTTACCTGTTTAATATTGGGAGACTGTTACATGCATAGAATTATCtcacagaaatgtttttatttaattattttatatttttccttttcattttatacagttgaacAAACCACAACTTTGTTGTTTAGCTGCTGTTTTGTACTTGAATGTGCATTGAATAAATTTTGTAATGGAGCTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000170945

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018760 lncRNA upstream 177058 9680021 ~ 9684915 (+) True XLOC_008332
TCONS_00018759 lncRNA upstream 212517 9640687 ~ 9649456 (+) False XLOC_008331
TCONS_00018890 lncRNA upstream 213724 9647618 ~ 9648249 (+) True XLOC_008331
TCONS_00016716 lncRNA upstream 404591 9451978 ~ 9457382 (+) True XLOC_008330
TCONS_00016715 lncRNA upstream 443822 9414153 ~ 9418151 (+) True XLOC_008329
TCONS_00016718 lncRNA downstream 5704 9878848 ~ 9883813 (+) True XLOC_008334
TCONS_00016720 lncRNA downstream 612390 10485534 ~ 10487195 (+) True XLOC_008336
TCONS_00016721 lncRNA downstream 877064 10750208 ~ 10756943 (+) False XLOC_008337
TCONS_00016722 lncRNA downstream 877092 10750236 ~ 10756943 (+) False XLOC_008337
TCONS_00016723 lncRNA downstream 877957 10751101 ~ 10756943 (+) True XLOC_008337
TCONS_00016714 mRNA upstream 474183 9387350 ~ 9387790 (+) True XLOC_008328
TCONS_00016713 mRNA upstream 508277 9327252 ~ 9353696 (+) True XLOC_008327
TCONS_00016711 mRNA upstream 546407 9297340 ~ 9315566 (+) False XLOC_008326
TCONS_00016710 mRNA upstream 557712 9294665 ~ 9304261 (+) False XLOC_008326
TCONS_00016709 mRNA upstream 564410 9294620 ~ 9297563 (+) False XLOC_008326
TCONS_00016729 mRNA downstream 1508388 11381532 ~ 11394322 (+) True XLOC_008341
TCONS_00016730 mRNA downstream 1554476 11427620 ~ 11443214 (+) True XLOC_008342
TCONS_00016732 mRNA downstream 1770515 11643659 ~ 11671173 (+) True XLOC_008344
TCONS_00016736 mRNA downstream 1820480 11693624 ~ 11757647 (+) False XLOC_008346
TCONS_00016735 mRNA downstream 1820480 11693624 ~ 11757647 (+) True XLOC_008346
TCONS_00016712 other upstream 550495 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016703 other upstream 822809 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016700 other upstream 1130107 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016699 other upstream 1179036 8682822 ~ 8682937 (+) True XLOC_008317
TCONS_00016681 other upstream 3089853 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016719 other downstream 22714 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016731 other downstream 1692247 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016757 other downstream 3651730 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016758 other downstream 4084578 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016791 other downstream 5521098 15394242 ~ 15401640 (+) True XLOC_008381

Expression Profile

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