RNA id: CI01000057_04512368_04525620.mRNA


Basic Information

Item Value
RNA id CI01000057_04512368_04525620.mRNA
length 2541
RNA type mRNA
GC content 0.45
exon number 17
gene id CI01000057_04512368_04525620
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4511877 ~ 4525620 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAATTCTACATGGTTTACTACAGATGGAGAGATTATCAAACAGATTAAAGGCACAAACCAGGAGCTTGCTGAAATCAAAGAACTACTGAAGCAACAGATACAGGAAATTGTTTTCCTGAAGAACACGGTTATGGAGTGTGAAGCCTGTGGCATGAGACCAGTAGATCCACAGCCTTTATGTGATCCGAACCCCTGCCACGCTGGTGTGGAATGCATTATGACACCCAGTGGCATCAAGTGTGGCCCATGCCCGGTGGGCATGACAGGAAATGGAACTCACTGTACTGATGTTGATGAGTGTGCTGTAATGCCATGTCACATGGGGGTGAGATGCATTAACACATCACCTGGTTTTCGCTGTGGCCCCTGTCCAGCTGGGTACATTGGCCCCCAGGTGCAGGGGGTCGGACTTGCCTATGCATCTGCCAATAAGCAGGTCTGCACAGACAATAATGAGTGTGAAAACTCAAATGGAGGCTGCGTGGAGAACTCCAACTGCATCAACACACCAGGCTCTTTTCGTTGTGGTAGCTGTAAGACTGGTTTTGTTGGGGATCAGGCGAAAGGCTGCAAACCTGAGCGGGCTTGTGGTAATGGTCAGCCCAATCCTTGCCATGCCAGCGCAGAATGCATTGTTCACCGTGATGGACAGATTGAATGTGCATGTGGAGTTGGGTGGGCTGGGAATGGATACTTCTGTGGAATAGACACTGATATTGATGGCTTTCCTGATGAAAATTTGGAATGTGCGGAAAGAAACTGTGCAAAGGACAATTGCCTCACTGTTCCAAACTCCGGCCAAGAAGATGCAGACAAAGATAACATCGGTGATGCATGTGATGATGATGCAGATGGAGATGGGATCCTAAACACAGAGATTTGCTTTCCAGGAATAAAAAATGATGAGGATAACTGCAAAAAGGTGCCAAACCGTGACCAGAAAGATAGAGATGGTGATAATGTTGGTGACGCTTGTGACAGCTGTCCCTATGTCCGCAACCCTGATCAGACGGATGTGGATAATGATTTAATTGGCGATCCTTGTGACACCAACAAAGACAGTGATGGAGATGGACATCAGGACACTCGAGACAACTGTCCTGCAGTTATCAACAGCTCCCAGCTAGACACAGACAAGGATGGCATTGGAGATGAATGTGATGATGATGATGACAACGATGGCATTCCTGATCTCCTTCCACCTGGTCCAGACAACTGTCGTCTGATTCCAAACCCACTGCAGGAGGACTTTGATGGTGATGGGATTGGCAACGTTTGTGAGAATGACTTTGACAATGACACATATAGCGACAGCATTGACGTTTGTCCTGAGAATGCTGAGGTCACTCTCACCGACTTCAGAACCTATCAGACTGTAGTTCTAGATCCAGAGGGTGATGCGCAAATCGATCCAAACTGGGTGGTGCTTAATCAGGGAAGAGAGATTGTTCAGACCATGAACAGTGACCCTGGACTCGCTGTAGGCTACACAGCATTTAATGGTGTGGACTTCGAAGGGACGTTTCATGTGAATACTGAGACAGATGATGACTATGCAGGCTTTATCTTTGGCTATCAGGACAGCTCGAGCTTCTACGTGGTAATGTGGAAGCAAATCGAGCAGATTTACTGGCAAGCCAACCCTTTCCGAGCTGTAGCTGAGCCTGGTATCCAACTAAAGGCAGTGAAATCAGACACAGGGCCTGGAGAGAACTTGCGGAATTCACTCTGGCACACAGGTGACTCAACTAACCAGGTGAAACTCTTGTGGAAAGATTCCAGGAATGTTGGCTGGAAAGACAAGACTTCTTATCGCTGGTTCCTGCAGCACAGACCCCAAGAAGGATATATTAGGGTTCGGTTCTATGAAGGTCAGCAGATGGTGGCAGACACAGGAATTATTATTGACACAACCATGAGAGGAGGCAGACTGGGAGTTTTCTGCTTCTCCCAGGAGAACATCATCTGGGCCAATCTGCGCTACAGATGCAACGATACAATCCCAGAGGACTTTGAGACATTCAGAGCCCAGCAAATCCAGCTTTTTTAGACCCAAACTCAACATCAGAGTTCTTTTTTACAAGGTTAATGTGTGTTTGAGTTGTATATTTCTGTCATGTGTGTTATATTTTATACTCAATTTTTTATACTTTATGAACAGTAGACAAGCCTTCTTGATGACTCTGATTAGCACTGAGGTCACAAACACCAGAATTTAAATATATATATGTATTTTAAAAACACGTACAGAAATACAGGTTACAAAATATAAATGATATAACAAGAAGGCTCTGATATATGCAGCTGAGACATCATGCACATCCATATTTAGCATTTTTTTTTTTTTCTGAGAAAGGAAAAGGACCAGCAAACGACAAAGACGAAATCAGTTCCTTCTACAATCAGTTACCACAAATAGGAGACAAAGATGACCACACCAGCACAGCGACTATAGAAATGGGCATCTGGATAGATCCAACCCAATGAAAGCTCTAGACAACCACAAATTATATGTCCTAATATACCGTTAATTCCAATAAA

Function

GO: NA

KEGG:

id description
K04659 THBS2S; thrombospondin 2/3/4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279884 lncRNA downstream 14208 4487312 ~ 4497669 (-) True G246611
TU279890 lncRNA downstream 15419 4495587 ~ 4496458 (-) True G246617
TU279881 lncRNA downstream 26695 4484909 ~ 4485182 (-) True G246609
TU279860 lncRNA downstream 51613 4450002 ~ 4460264 (-) True G246588
TU279867 lncRNA downstream 68063 4434813 ~ 4443814 (-) True G246595
TU279869 lncRNA upstream 7176 4532796 ~ 4534368 (-) True G246597
TU279875 lncRNA upstream 31106 4556726 ~ 4557010 (-) True G246603
TU279859 lncRNA upstream 31491 4557111 ~ 4559437 (-) True G246587
TU279908 lncRNA upstream 72332 4597952 ~ 4598294 (-) True G246632
TU279872 lncRNA upstream 129357 4654977 ~ 4655439 (-) True G246600
CI01000057_04467496_04467864.mRNA mRNA downstream 43876 4467473 ~ 4468001 (-) True CI01000057_04467496_04467864
CI01000057_04455612_04467173.mRNA mRNA downstream 44660 4455034 ~ 4467217 (-) True CI01000057_04455612_04467173
CI01000057_04210090_04214161.mRNA mRNA downstream 297716 4209916 ~ 4214161 (-) True CI01000057_04210090_04214161
CI01000057_04195849_04198909.mRNA mRNA downstream 312968 4195795 ~ 4198909 (-) True CI01000057_04195849_04198909
CI01000057_04145896_04146600.mRNA mRNA downstream 365087 4145264 ~ 4146790 (-) True CI01000057_04145896_04146600
CI01000057_04543887_04545600.mRNA mRNA upstream 17251 4542871 ~ 4546001 (-) True CI01000057_04543887_04545600
CI01000057_04560576_04573644.mRNA mRNA upstream 34020 4559640 ~ 4573644 (-) True CI01000057_04560576_04573644
CI01000057_04583096_04590861.mRNA mRNA upstream 57291 4582911 ~ 4590861 (-) True CI01000057_04583096_04590861
CI01000057_04597494_04597814.mRNA mRNA upstream 71795 4597415 ~ 4597814 (-) True CI01000057_04597494_04597814
CI01000057_04635274_04644405.mRNA mRNA upstream 109597 4635217 ~ 4644405 (-) True CI01000057_04635274_04644405
TU279491 other downstream 614186 3895949 ~ 3897691 (-) True G246256
TU277965 other downstream 2590456 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 2706724 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 3940849 570530 ~ 571028 (-) True G244358
TU277369 other downstream 3940963 570530 ~ 570914 (-) False G244358
TU279998 other upstream 403124 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 403124 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 685490 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 1397920 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007462 False 6049 mRNA 0.41 19 NC_007122.7 6941389 ~ 6970107 (-)
bowfin (Amia calva) AMCG00006116 True 2211 mRNA 0.53 16 CM030142.1 16001553 ~ 16012344 (-)