RNA id: TU277923


Basic Information

Item Value
RNA id TU277923
length 1842
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G244811
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 1830318 ~ 1832356 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAATATGATAGTAACATCAAGTAACAATATGATAGTAGTTATCAAGTAACATTTTCTTTATTAACAATCTGGTTAAAAAAAGTTCCATTCCAAGTGCACCACACATGAAGTGATCAACATGGTGTAAATGTAAAACTAAATGTTGTAAAACACATTACAAACTTATCTTAAACACATCCTATATACTCAGAAATAATATAAAATAAGAAAAATCCTAAATATTTCTTAGCCAAAAAGTAATAGCAATAAATAACACCAGCAAATGCTTTGTAAAAACAGAAAACAACAGCAGCTTTCAGCCTGTCACCATCATGTAAACATGAAATATCAAACATACAGTAGTAGTCCTGTACAGGTTTTTGCATTCCATTGTGCTAGTTGTCCTATTGTTTCTATAGTCGGCGGACATGTTTGGCTGTTGCACCCATGAAACGACATTCTAAAAACACAGCGGTCAAGTTAAAAAAAGTTCAACTCGCGTTCAATAACTTTGCCTTTTTTTCTCATTCAACTGCCCGCGACTCATTTTTATAACGCAATAACGCATTTATGAATAAACAGTCTTCTACTTTCATAGAGCGTCACATGAGAGCGGGTAATCAGGCATTTGTTACAAAAGATTTTAATTTCAAATAAATGCTGTTCTTTTGAACTTTCTATTCAAAAAATGTCATCCACGAAAAGTATTAAGCAGCACAACATTGATAATAAAAAATGTTTCTTGATGCAACAGAATTAGAATAGAAAACAGGTATTTTAAATCATAATAAAAGTTTACAATATTACTGTTTTACAGTATTTTTGACCAAAGCTTGGTGAGCATAAGTGACTTCTTTCAAAAACAATTTTTTAAAAATCAATCTCACCAACCTCAAACTTGAAGTAGTGTAAATCTATGGGATTTTATGCCTATTTTACCATACACTGCAGGAGCTATACACCAATATTTAATGAGCAATAGTAAGTGATGCTTGCTTTTGAAGCTGTCTGCTGCCATTAATAAGGGAGCAAAACCTATTTCATCAGAGACCCCCGGCCCTGTTTAAGCTCCTTACAGCTTAAGATACCTAATCACCAGCTGGCCCCTTAGATCCGTTAAACAACTTCTTTATTATCGTTTACAAGCTGTGCAATGTCCAGAAGGTCCCTGTGAACAAAGCAAACGAGCCCTAGCTGAGCGCTCCAAAACCTGGGTGGACTGAGCCCGTGGGACTGTCCCAGCCCTGGTCCTGTTATGCAGTTTTAAAAGAGTTTCACAGGAACCAGCGCAAAAGGGTCCAAAACCAGAGATCTATTCACTGCATTGTCCCACAATCCCCCTCCTCAATTCGCAGGAGAAAAGAGGGACTATGGGAGGGGGCTGGTGGCTGGAGAGGGCAGCAGGGGGTCAGTTTGATTTCAAAGCCCAGGGTACAGGCTCGTCCTAAATGCACTCCAGCATCTGAAGGAGGGGGCTGCACTCTGCGGCTCTCGGACACTCCGGCAGGGAGCCAAGAGAGTCTAGCGGAGCGTGAAGGAGGAAAAATAGCCCATGTATGTGTATTTAAAATTTACAAAAGACAAGCCCTATTGAAATTTCCTGAACCCTTGCTAAAATTTGAATACGAGCAAAAAAAGGGCTTCTGTCAGCAAAAGGTTCAGAAACACAAAATGCAAAAACCATGAAGTCCTCCAGGTTAATTATTTTACAACTATGATAAGATTAAACACGACCAAAGAGGATACGCTGGGAATTACTTATGCCATACTCCCTTGATCCCAATTAAAGTTTTGTAACAAAGTAAAAGTACATTACAAGTACACACACACAAAACCCACAGCTTTGCATTAACACATTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277922 lncRNA downstream 1979 1827699 ~ 1828339 (-) True G244810
TU277921 lncRNA downstream 4039 1825284 ~ 1826279 (-) True G244809
TU277919 lncRNA downstream 9148 1820911 ~ 1821170 (-) True G244807
TU277918 lncRNA downstream 10331 1819643 ~ 1819987 (-) True G244806
TU277917 lncRNA downstream 11723 1818257 ~ 1818595 (-) True G244805
TU277924 lncRNA upstream 236 1832592 ~ 1833056 (-) True G244812
TU277925 lncRNA upstream 995 1833351 ~ 1833603 (-) True G244813
TU277929 lncRNA upstream 2361 1834717 ~ 1910969 (-) False G244814
TU277927 lncRNA upstream 74376 1906732 ~ 1910969 (-) False G244814
TU277928 lncRNA upstream 74376 1906732 ~ 1908498 (-) True G244814
CI01000057_01801708_01806454.mRNA mRNA downstream 23864 1801528 ~ 1806454 (-) False CI01000057_01801708_01806454
CI01000057_01707526_01708449.mRNA mRNA downstream 121869 1707495 ~ 1708449 (-) True CI01000057_01707526_01708449
CI01000057_01559593_01572133.mRNA mRNA downstream 257468 1559547 ~ 1572850 (-) True CI01000057_01559593_01572133
CI01000057_01542990_01546030.mRNA mRNA downstream 284288 1542797 ~ 1546030 (-) True CI01000057_01542990_01546030
CI01000057_01471460_01487413.mRNA mRNA downstream 342556 1471127 ~ 1487762 (-) True CI01000057_01471460_01487413
CI01000057_01904867_01921400.mRNA mRNA upstream 72177 1904533 ~ 1921905 (-) False CI01000057_01904867_01921400
CI01000057_02200951_02207673.mRNA mRNA upstream 368224 2200580 ~ 2207673 (-) True CI01000057_02200951_02207673
CI01000057_02248495_02254279.mRNA mRNA upstream 415990 2248346 ~ 2254318 (-) True CI01000057_02248495_02254279
CI01000057_02258394_02291730.mRNA mRNA upstream 426038 2258394 ~ 2291730 (-) True CI01000057_02258394_02291730
CI01000057_02374706_02384095.mRNA mRNA upstream 542193 2374549 ~ 2384849 (-) True CI01000057_02374706_02384095
TU277905 other downstream 25165 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 1259290 570530 ~ 571028 (-) True G244358
TU277369 other downstream 1259404 570530 ~ 570914 (-) False G244358
TU277965 other upstream 87700 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU279491 other upstream 2059379 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 3096388 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 3096388 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 3378754 5211110 ~ 5283617 (-) False G246780

Expression Profile