Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00017047 |
| length | 855 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 9 |
| gene id | XLOC_008521 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 24795473 ~ 24837655 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | biological_process |
| GO:0006906 | vesicle fusion | biological_process |
| GO:0048209 | regulation of vesicle targeting, to, from or within Golgi | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0005797 | Golgi medial cisterna | cellular_component |
| GO:0005801 | cis-Golgi network | cellular_component |
| GO:0000139 | Golgi membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0031201 | SNARE complex | cellular_component |
| GO:0005484 | SNAP receptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050417-133 | Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; regulation of vesicle targeting, to, from or within Golgi; and vesicle fusion. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi medial cisterna; Golgi membrane; and cis-Golgi network. Orthologous to human GOSR1 (golgi SNAP receptor complex member 1). |
| ensembl_id | ENSDART00000141033 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00018961 | lncRNA | upstream | 105788 | 24676913 ~ 24689697 (+) | False | XLOC_008517 |
| TCONS_00017038 | lncRNA | upstream | 105788 | 24681496 ~ 24689697 (+) | True | XLOC_008517 |
| TCONS_00017037 | lncRNA | upstream | 108803 | 24679659 ~ 24686682 (+) | False | XLOC_008517 |
| TCONS_00018960 | lncRNA | upstream | 176841 | 24616570 ~ 24618644 (+) | True | XLOC_008515 |
| TCONS_00018959 | lncRNA | upstream | 212060 | 24582174 ~ 24583425 (+) | False | XLOC_008514 |
| TCONS_00018962 | lncRNA | downstream | 4051 | 24841291 ~ 24844913 (+) | False | XLOC_008522 |
| TCONS_00018963 | lncRNA | downstream | 5369 | 24842609 ~ 24844913 (+) | True | XLOC_008522 |
| TCONS_00018964 | lncRNA | downstream | 170315 | 25007555 ~ 25053314 (+) | False | XLOC_008524 |
| TCONS_00017051 | lncRNA | downstream | 183845 | 25021085 ~ 25027250 (+) | False | XLOC_008524 |
| TCONS_00018965 | lncRNA | downstream | 183864 | 25021104 ~ 25053314 (+) | False | XLOC_008524 |
| TCONS_00017044 | mRNA | upstream | 875 | 24756860 ~ 24794610 (+) | False | XLOC_008520 |
| TCONS_00017045 | mRNA | upstream | 4060 | 24756997 ~ 24791425 (+) | True | XLOC_008520 |
| TCONS_00017042 | mRNA | upstream | 40590 | 24746444 ~ 24754895 (+) | False | XLOC_008519 |
| TCONS_00017043 | mRNA | upstream | 41271 | 24749985 ~ 24754214 (+) | True | XLOC_008519 |
| TCONS_00017041 | mRNA | upstream | 50565 | 24737599 ~ 24744920 (+) | True | XLOC_008518 |
| TCONS_00017052 | mRNA | downstream | 187445 | 25024685 ~ 25025816 (+) | True | XLOC_008524 |
| TCONS_00017057 | mRNA | downstream | 318881 | 25156121 ~ 25169613 (+) | False | XLOC_008530 |
| TCONS_00017058 | mRNA | downstream | 319142 | 25156382 ~ 25169613 (+) | False | XLOC_008530 |
| TCONS_00017059 | mRNA | downstream | 320864 | 25158104 ~ 25169544 (+) | True | XLOC_008530 |
| TCONS_00017060 | mRNA | downstream | 601474 | 25438714 ~ 25448626 (+) | False | XLOC_008534 |
| TCONS_00017035 | other | upstream | 112195 | 24676913 ~ 24683290 (+) | False | XLOC_008517 |
| TCONS_00017027 | other | upstream | 226423 | 24563768 ~ 24569062 (+) | False | XLOC_008513 |
| TCONS_00016993 | other | upstream | 1344799 | 23446189 ~ 23450686 (+) | True | XLOC_008495 |
| TCONS_00016990 | other | upstream | 1417297 | 23378071 ~ 23378188 (+) | True | XLOC_008494 |
| TCONS_00016986 | other | upstream | 2062452 | 22722712 ~ 22733033 (+) | False | XLOC_008489 |
| TCONS_00017050 | other | downstream | 124896 | 24962136 ~ 24962252 (+) | True | XLOC_008523 |
| TCONS_00017063 | other | downstream | 632489 | 25469729 ~ 25469845 (+) | True | XLOC_008536 |
| TCONS_00017070 | other | downstream | 798101 | 25635341 ~ 25656331 (+) | True | XLOC_008540 |
| TCONS_00017071 | other | downstream | 830347 | 25667587 ~ 25667701 (+) | True | XLOC_008541 |
| TCONS_00017074 | other | downstream | 1060206 | 25897446 ~ 25897539 (+) | False | XLOC_008543 |
