RNA id: TCONS_00017052



Basic Information


Item Value
RNA id TCONS_00017052
length 1067
RNA type mRNA
GC content 0.34
exon number 2
gene id XLOC_008524
representative True

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25007555 ~ 25053314 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TTTTATATTTCTAACATACAGGGCCATTGGAAAACCACACAGCTACACTGAAGATGGGAATCCTTGAAACAGTTAGCATCAGGAGCATGATGAAGTTTAAGAGCCCTGTCAACTGTGCTGAATGTCTGCTGTCCTGGAAGAGGAGATGGTGCTCGACAATAGGACGCTTTATCAGTGCATCGTTTGTGCTTTTGGATTATAGTTTCTACTCAACCTGGAATACAATGACTAAATAGGTTTacatggtaaatatttgaaaacagaTGCAGCTTTATGTGCTTGAAGTTCctcttgaagatttttttttacttttcttgaaacttttgtgagttttttttctctgttcTGGAATCATCTGTGTCAACTGGGTAAAGTAACCCATTGTTTAGATTTGATGGTGCTTTTGacaattttaatattcatttattaattttccttcagcttagtcccctgtttatcagggggagccacagcggaatgaaccgttcattgtttatatgcaaatatattaaatgtttaatgttaatgaatgggtttaaccattaaaaatgtgattttcatAAGTTCAGATTATCTTTTGTAGAATGAAAGTATTGAGtttttttttttacatttttgcagataTTTGGGATATATATTAAGTACACTTCAGCTctatgtattgaccttattcctcacgtacgagcaggcgcagccatttgaatcttttctggagatttccgctctcattcacttcctttgatttttagacgttaaaaactgtttgttttgatgcttgatgttgcaaactgatattttcttaatatattattctgctttgtctatagagtcataaacacactagtttgtagagcaagtagtttgtctGTTTTCCGCTGTttaatattcctagtcatttctcccatagggcaCTGAATCAGATGTTCGAAAACAAATCGGAAAAACTTCCGCCTTAAAGAATGAGGTCAATATTAGGAGAAATTAAATGCTAGAATTTATACGGTATACTTTGTtgaaatgtgtaatgtatttgttattctaaagtacttttacaatagtgtctcttt

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000188889

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00018962 lncRNA upstream 179772 24841291 ~ 24844913 (+) False XLOC_008522
TCONS_00018963 lncRNA upstream 179772 24842609 ~ 24844913 (+) True XLOC_008522
TCONS_00018961 lncRNA upstream 334988 24676913 ~ 24689697 (+) False XLOC_008517
TCONS_00017038 lncRNA upstream 334988 24681496 ~ 24689697 (+) True XLOC_008517
TCONS_00017037 lncRNA upstream 338003 24679659 ~ 24686682 (+) False XLOC_008517
TCONS_00017053 lncRNA downstream 2666 25028482 ~ 25054730 (+) True XLOC_008525
TCONS_00017054 lncRNA downstream 30145 25055961 ~ 25062073 (+) True XLOC_008526
TCONS_00017055 lncRNA downstream 33768 25059584 ~ 25060654 (+) True XLOC_008527
TCONS_00017056 lncRNA downstream 37490 25063306 ~ 25069355 (+) True XLOC_008528
TCONS_00018966 lncRNA downstream 69020 25094836 ~ 25095298 (+) True XLOC_008529
TCONS_00017048 mRNA upstream 187030 24795536 ~ 24837655 (+) False XLOC_008521
TCONS_00017049 mRNA upstream 187308 24795546 ~ 24837377 (+) True XLOC_008521
TCONS_00017046 mRNA upstream 187441 24795473 ~ 24837244 (+) False XLOC_008521
TCONS_00017047 mRNA upstream 187445 24795485 ~ 24837240 (+) False XLOC_008521
TCONS_00017044 mRNA upstream 230075 24756860 ~ 24794610 (+) False XLOC_008520
TCONS_00017057 mRNA downstream 130305 25156121 ~ 25169613 (+) False XLOC_008530
TCONS_00017058 mRNA downstream 130566 25156382 ~ 25169613 (+) False XLOC_008530
TCONS_00017059 mRNA downstream 132288 25158104 ~ 25169544 (+) True XLOC_008530
TCONS_00017060 mRNA downstream 412898 25438714 ~ 25448626 (+) False XLOC_008534
TCONS_00017061 mRNA downstream 413290 25439106 ~ 25443025 (+) True XLOC_008534
TCONS_00017050 other upstream 62433 24962136 ~ 24962252 (+) True XLOC_008523
TCONS_00017035 other upstream 341395 24676913 ~ 24683290 (+) False XLOC_008517
TCONS_00017027 other upstream 455623 24563768 ~ 24569062 (+) False XLOC_008513
TCONS_00016993 other upstream 1573999 23446189 ~ 23450686 (+) True XLOC_008495
TCONS_00016990 other upstream 1646497 23378071 ~ 23378188 (+) True XLOC_008494
TCONS_00017063 other downstream 443913 25469729 ~ 25469845 (+) True XLOC_008536
TCONS_00017070 other downstream 609525 25635341 ~ 25656331 (+) True XLOC_008540
TCONS_00017071 other downstream 641771 25667587 ~ 25667701 (+) True XLOC_008541
TCONS_00017074 other downstream 871630 25897446 ~ 25897539 (+) False XLOC_008543
TCONS_00017075 other downstream 871899 25897715 ~ 25897799 (+) True XLOC_008543

Expression Profile


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