RNA id: TU302245


Basic Information

Item Value
RNA id TU302245
length 243
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G266299
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 7026047 ~ 7026289 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCTCATTAATATGCAGCTCATTAGAGGTCTTTATGCGATTCTTTTGTCTTCTCAGGTGTAAATCACCCATTATTCATGATGATTCACGCCTCCATGCATACTGTGTTTCTTGACAAAAAGTGTCTTACAAAAACTAAATCAATATATTGTTATAAATGAACGAGTATGCAGGATAATTTTTACATCATTTTGAAGCAAAAACTCTAGTCTACAACCTCCAATACCCAGAAGTCTTGTGAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302240 lncRNA upstream 4538 7021305 ~ 7021509 (+) True G266294
TU302119 lncRNA upstream 372078 6651817 ~ 6653969 (+) True G266176
TU301142 lncRNA upstream 606721 6418233 ~ 6419326 (+) True CI01000063_06408168_06418415
TU301143 lncRNA upstream 606927 6418200 ~ 6419120 (+) False CI01000063_06408168_06418415
TU301141 lncRNA upstream 606927 6418233 ~ 6419120 (+) False CI01000063_06408168_06418415
TU302120 lncRNA downstream 66988 7093277 ~ 7093476 (+) True G266177
TU302152 lncRNA downstream 88748 7115037 ~ 7117317 (+) True G266208
TU302113 lncRNA downstream 102027 7128316 ~ 7149391 (+) False G266171
TU302112 lncRNA downstream 102240 7128529 ~ 7149391 (+) True G266171
TU302333 lncRNA downstream 188551 7214840 ~ 7215096 (+) True G266375
CI01000063_07012391_07014164.mRNA mRNA upstream 9672 7012225 ~ 7016375 (+) True CI01000063_07012391_07014164
CI01000063_06990713_06993818.mRNA mRNA upstream 32195 6990640 ~ 6993852 (+) True CI01000063_06990713_06993818
CI01000063_06982270_06983358.mRNA mRNA upstream 42592 6981946 ~ 6983455 (+) True CI01000063_06982270_06983358
CI01000063_06928230_06954632.mRNA mRNA upstream 71415 6928230 ~ 6954632 (+) True CI01000063_06928230_06954632
CI01000063_06733190_06869248.mRNA mRNA upstream 156799 6733190 ~ 6869248 (+) True CI01000063_06733190_06869248
CI01000063_07079516_07080598.mRNA mRNA downstream 52894 7079183 ~ 7081349 (+) True CI01000063_07079516_07080598
CI01000063_07120937_07121851.mRNA mRNA downstream 94313 7120602 ~ 7123306 (+) False CI01000063_07120937_07121851
CI01000063_07197046_07197411.mRNA mRNA downstream 170353 7196642 ~ 7197504 (+) True CI01000063_07197046_07197411
CI01000063_07199941_07203985.mRNA mRNA downstream 172808 7199097 ~ 7204038 (+) True CI01000063_07199941_07203985
CI01000063_07252228_07279272.mRNA mRNA downstream 225761 7252050 ~ 7280398 (+) True CI01000063_07252228_07279272
TU301297 other upstream 688687 6335278 ~ 6335601 (+) True G265462
TU301223 other upstream 1107018 5913783 ~ 5919029 (+) True G265391
TU297890 other upstream 4311530 2713615 ~ 2714517 (+) True G262436
TU297877 other upstream 4783082 2241408 ~ 2242965 (+) True G262423
TU297621 other upstream 5881040 1143871 ~ 1145007 (+) True G262194

Expression Profile