RNA id: TU302120


Basic Information

Item Value
RNA id TU302120
length 200
lncRNA type read_through
GC content 0.37
exon number 1
gene id G266177
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 7093277 ~ 7093476 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAAGTTGACTATTTTAACGATGTCTTTACTACTTCACTGGACCATGAATGTGGTAATTTCACTGTTTTCTATGGGAGATAAAAAACCTCTCGGATTTCATCAAAAATATCTTAATTTGTGTTCTGAAGATTAACAAAGTTCTTGCGGGTTTGTAATGACATGAGGGTGAGTAATTAATGACAGAAGTTTCATTTTTGGGTGAACTATTCCTTTAAGGGTTTTTCATGGAACCATCAATGCCAATAAAGAACCTTTATTTTTAAGAGTGAAAACAGTTCTTCAAAATATCTTCTTTTTTGTGTTGTGCTGATGAAAGAAAGAGTGTGAGTAAATGATGAAATGATGATTTTCATTTTTAGGTGAACTATCCCTTTAAATAGTTCCTACAAGGGTGGAATAATTAATGGGATATGTTTCAGTGGATTATTCGCATTCGTACATTTTATAGGAAGCAATGGGTGATGCTAATGTTGTTTAAAAGGAGTAGTGAGTCTTTCATTACCTTTACCAATGGCAATTGAATAATTTTGGACCTGAATACAAAGAAAAAATGCCAGATTTGAGTGTACCAAGCGCTCTAAAGTAGTGAATATTTAAAAGCACTGACCTAAAAGACTTCAAAAGACACAACGAGATAAAAAGAACAACACAACAATGAATGTGGACAGGACTCCAGCTGTTGTCTAGCTGACTTCTGGACACTTTGCACCAATATGTTTGCCACCACTGTCAATAGAACTGGAGGTTGATTCATAATCAACAGACACTTGAACTCCTGTGTCCATGAAACCAGACACACACTGAATGATAAACACACTGCTGTTGAAAATGCTCTGTTACAGCCATTTGCAAAAAGGGAAACGTTGGGCGTGTTTATGTCCGCAAGCCACAAACAAAGAATAAAGGGAAATGACTTTGAGGCCAGCATTGCACAGTGGCTGTTGATATAGATGGTGAAGAGGTTGTCAGCACATTTGTAAGAAAGACCTACTTTATTTTCATCCATGATACAGAGTTAAACAGACCTCTCCTGTGGTTTACGTCTCTGAAGCTTTTTCATTTTTTAAAACAACTGTATTCATCTGAATGCACATACAACCTGGATGAAGTTAAGTACTTTGAGTTTTTTAAGCCGACTGTATATGTGTTTAGGGAATGAAATCTGAAAAAAAAAAAAAAAAAAATAGTTTATCTTGCTATGCCTGCTTCGATGAGCCATTGTTTTGTCATTTCGTTTTATACTCAGACTAGTTTCAACAGGGGGCTCTGTACAGAAAAGCCTGTAAATGTATCAAAAACAGTGCCATACCTTTGATGAAAATCATGTAGGTCTAAAAACACATACCAAAGGCCGGCAAAGTTTGGAACGGTAGGATTGTCATTAATAACAACAAGTATCTATCGAAATCGTAATTTATTGTTATTTATTAATTATTTTCACACATTTCTCTCTTGCATTTAGAGATTTTAGTAACGTGTTGTGAAAAAACAGTGCAGAAATTAGTTTGATGGCTACCTTTTGGTGAGAATGAAGATTACGGTTAATGCACATTTGCATTTGAATGAATTATTCAAGGCGATAACGTCTATAAGAGCTTAGTTTTAAACCATTTTCAAATCTGAGAAACACCAAGGTAATTCATCATAGTGACAGACGATCGGTTTCATTCGAGGTTAAATACCTGAAACCAATTTCTCTGTGAAGTACTGTTGGGATGTTCTACATATCAGCACTGCAAAAGCAATCATGAGTGATTATCCCATGACAGCACACGCCAAACACAAGCTCCGGGCATTAAATTGGATGAGATGTGGTCTATTTCTGGAGATAAGCAGCATATTTATTATCAGATTCACGTTAAAGTACTAAACAATATTACAAACTGCCATTTGCAGACACACGTTGATGACATCAATCGAACTGGACCTTGGATACTGGAGGGATTGCGTGTTATATGATCTATTTGCCCACTTTAAAACATCTCAGCAGTGCTAAATTGTGCATGCTTTCTTTCAGTAGTTATGTATCTCTTTCTTTATAGTCAATAAATCATGTTCTTCTCATGATCTGAAAGTGGGATGGATGGATTCTGTGCGACTGCTCGCCCTGCTGCATTGCTTTACGTGACTGAAGGTTAAAGGAAGCCAATAATTTGTTCAAAAAACGTGCCAGGAGAGGTTTGGATATGGGACTTGCACTTTTCTGTGAGATATTTGTATGAGGAGACTGCAGGGGTTTGAGGTTGTGGGGGTTGAAGTAGGTGAGCCCTGTTTCACCGCTTGCCTGCTATTATTTGCCCCCAGCCCACAACAAATGTGCCATTTTTTTCACTTGCATCACAGAGTAGTCCTTTGAAATCAAGTACAACACTTAAAAAAGAGAAGTAAAAGATTAAAACTCCTGTCAAACTCTCTCTGTATCTGTTGTGTAATTCTTTGTAGAACTGAAAACAGTGTTACAAAAAAGGATTGCATGAGCGTGTGAGTGCGAGTGAATGTATTTGTATCGAAGAATGTGACGTGTGTATGTTGATTTTCTAGGATCAGAGCATGGCCGTGCTTATTAGAGGGTAGGACTCTATAGTATCGGGCTAGAGTTTGACAGG

Function

GO:

id name namespace
GO:0018107 peptidyl-threonine phosphorylation biological_process

KEGG:

id description
K11716 CDK5R1; cyclin-dependent kinase 5 activator 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302245 lncRNA upstream 66988 7026047 ~ 7026289 (+) True G266299
TU302240 lncRNA upstream 71768 7021305 ~ 7021509 (+) True G266294
TU302119 lncRNA upstream 439308 6651817 ~ 6653969 (+) True G266176
TU301142 lncRNA upstream 673951 6418233 ~ 6419326 (+) True CI01000063_06408168_06418415
TU301143 lncRNA upstream 674157 6418200 ~ 6419120 (+) False CI01000063_06408168_06418415
TU302113 lncRNA downstream 3303 7128316 ~ 7149391 (+) False G266171
TU302112 lncRNA downstream 3516 7128529 ~ 7149391 (+) True G266171
TU302333 lncRNA downstream 89827 7214840 ~ 7215096 (+) True G266375
TU302157 lncRNA downstream 97626 7222639 ~ 7223196 (+) True G266213
TU302341 lncRNA downstream 164474 7289487 ~ 7290012 (+) False G266383
CI01000063_07079516_07080598.mRNA mRNA upstream 11928 7079183 ~ 7081349 (+) True CI01000063_07079516_07080598
CI01000063_07012391_07014164.mRNA mRNA upstream 76902 7012225 ~ 7016375 (+) True CI01000063_07012391_07014164
CI01000063_06990713_06993818.mRNA mRNA upstream 99425 6990640 ~ 6993852 (+) True CI01000063_06990713_06993818
CI01000063_06982270_06983358.mRNA mRNA upstream 109822 6981946 ~ 6983455 (+) True CI01000063_06982270_06983358
CI01000063_06928230_06954632.mRNA mRNA upstream 138645 6928230 ~ 6954632 (+) True CI01000063_06928230_06954632
CI01000063_07197046_07197411.mRNA mRNA downstream 71629 7196642 ~ 7197504 (+) True CI01000063_07197046_07197411
CI01000063_07199941_07203985.mRNA mRNA downstream 74084 7199097 ~ 7204038 (+) True CI01000063_07199941_07203985
CI01000063_07252228_07279272.mRNA mRNA downstream 127037 7252050 ~ 7280398 (+) True CI01000063_07252228_07279272
CI01000063_07335335_07350224.mRNA mRNA downstream 210322 7335335 ~ 7350224 (+) True CI01000063_07335335_07350224
CI01000063_07372666_07374936.mRNA mRNA downstream 247653 7372666 ~ 7374961 (+) True CI01000063_07372666_07374936
TU301297 other upstream 755917 6335278 ~ 6335601 (+) True G265462
TU301223 other upstream 1174248 5913783 ~ 5919029 (+) True G265391
TU297890 other upstream 4378760 2713615 ~ 2714517 (+) True G262436
TU297877 other upstream 4850312 2241408 ~ 2242965 (+) True G262423
TU297621 other upstream 5948270 1143871 ~ 1145007 (+) True G262194

Expression Profile