RNA id: TU319886


Basic Information

Item Value
RNA id TU319886
length 298
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G282212
representative True

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 3257260 ~ 3257557 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTGTTTATCCTGAAGTTTACCGTAGTCAGCCGGATCCGGGCTATATCCAGGTGAGATCGAGGACGCGCCTAGACACGAAGACAACGCAGCTCTGAAGTGTCAGCAGAGAGAACTAGATCAACTAGATCATCCCCTGTGAAGGCCTCATCGACACGACAGCCAGTGGCACAGATCCTCAACAAACCGTCCATACCGGCGTGATGAATACGATCCTCAACTAGATGGAACTGGAATAAATACTCTGACTGTTGCGATCCCAGTCAAACTTATGAAAGCTGCCTGAATCATAATCATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319885 lncRNA upstream 82 3256927 ~ 3257178 (+) True G282211
TU319884 lncRNA upstream 5837 3251148 ~ 3251423 (+) True G282210
TU319883 lncRNA upstream 7366 3249578 ~ 3249894 (+) True G282209
TU319854 lncRNA upstream 32649 3224251 ~ 3224611 (+) True G282184
TU319853 lncRNA upstream 33039 3223989 ~ 3224221 (+) True G282183
TU319887 lncRNA downstream 22 3257579 ~ 3257791 (+) True G282213
TU319888 lncRNA downstream 245 3257802 ~ 3258089 (+) True G282214
TU319889 lncRNA downstream 1834 3259391 ~ 3259763 (+) True G282215
TU319890 lncRNA downstream 2419 3259976 ~ 3260375 (+) True G282216
TU319891 lncRNA downstream 3543 3261100 ~ 3261315 (+) True G282217
CI01000071_03108610_03108994.mRNA mRNA upstream 148266 3108444 ~ 3108994 (+) True CI01000071_03108610_03108994
CI01000071_03062277_03064334.mRNA mRNA upstream 192554 3061838 ~ 3064706 (+) True CI01000071_03062277_03064334
CI01000071_03016024_03022596.mRNA mRNA upstream 234266 3014670 ~ 3022994 (+) True CI01000071_03016024_03022596
CI01000071_02960341_02966088.mRNA mRNA upstream 290814 2960037 ~ 2966446 (+) True CI01000071_02960341_02966088
CI01000071_02927971_02953988.mRNA mRNA upstream 303093 2926649 ~ 2954167 (+) True CI01000071_02927971_02953988
CI01000071_03329447_03356262.mRNA mRNA downstream 71890 3329447 ~ 3357152 (+) True CI01000071_03329447_03356262
CI01000071_03361493_03387786.mRNA mRNA downstream 103936 3361493 ~ 3387878 (+) False CI01000071_03361493_03387786
CI01000071_03414821_03439810.mRNA mRNA downstream 157264 3414821 ~ 3439810 (+) True CI01000071_03414821_03439810
CI01000071_03756518_03756925.mRNA mRNA downstream 497199 3754756 ~ 3757404 (+) True CI01000071_03756518_03756925
CI01000071_03793473_03817709.mRNA mRNA downstream 535161 3792718 ~ 3819100 (+) True CI01000071_03793473_03817709
TU319744 other upstream 200729 3056084 ~ 3056531 (+) True G282080
TU319630 other upstream 428656 2804644 ~ 2804806 (+) True G281974
TU318234 other upstream 1879590 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 2335164 905217 ~ 922096 (+) True G280443
TU318001 other upstream 2453943 799775 ~ 799876 (+) True G280464

Expression Profile