RNA id: TU319889


Basic Information

Item Value
RNA id TU319889
length 373
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G282215
representative True

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 3259391 ~ 3259763 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAGATTCTGTAACACAGTCACCTTTTTCCGTACCTATCAGTTTTAAAGACGCACATACAATATAAACACACTCAGATGTGTTTGAATGTCATGTTGTCAGGTAGTGAACTCCTGACTCCAGCGAGATGTTTATTGTGAATCATCCCTCCATCTGTTCCCTCACAATAAAAGAGCAGTTCTCCGATGCTCGCTGTTCTCTGGCAGTAATCAGACGCTGGCTATAGAGAACAGGGTTGATCGATTAATCACTAGGTTGTAGAAAGTGCACAAGCAACAAATGCAACATGCACCGCTGTGCTCGAGCCCTGCTGCACTCTATCACGTGGAATACACTTCGCTTTATCGATCTATTGTGATGCCATCCTTTCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319888 lncRNA upstream 1302 3257802 ~ 3258089 (+) True G282214
TU319887 lncRNA upstream 1600 3257579 ~ 3257791 (+) True G282213
TU319886 lncRNA upstream 1834 3257260 ~ 3257557 (+) True G282212
TU319885 lncRNA upstream 2213 3256927 ~ 3257178 (+) True G282211
TU319884 lncRNA upstream 7968 3251148 ~ 3251423 (+) True G282210
TU319890 lncRNA downstream 213 3259976 ~ 3260375 (+) True G282216
TU319891 lncRNA downstream 1337 3261100 ~ 3261315 (+) True G282217
TU319892 lncRNA downstream 4046 3263809 ~ 3264102 (+) True G282218
TU319893 lncRNA downstream 5059 3264822 ~ 3265306 (+) True G282219
TU319894 lncRNA downstream 5748 3265511 ~ 3265829 (+) True G282220
CI01000071_03108610_03108994.mRNA mRNA upstream 150397 3108444 ~ 3108994 (+) True CI01000071_03108610_03108994
CI01000071_03062277_03064334.mRNA mRNA upstream 194685 3061838 ~ 3064706 (+) True CI01000071_03062277_03064334
CI01000071_03016024_03022596.mRNA mRNA upstream 236397 3014670 ~ 3022994 (+) True CI01000071_03016024_03022596
CI01000071_02960341_02966088.mRNA mRNA upstream 292945 2960037 ~ 2966446 (+) True CI01000071_02960341_02966088
CI01000071_02927971_02953988.mRNA mRNA upstream 305224 2926649 ~ 2954167 (+) True CI01000071_02927971_02953988
CI01000071_03329447_03356262.mRNA mRNA downstream 69684 3329447 ~ 3357152 (+) True CI01000071_03329447_03356262
CI01000071_03361493_03387786.mRNA mRNA downstream 101730 3361493 ~ 3387878 (+) False CI01000071_03361493_03387786
CI01000071_03414821_03439810.mRNA mRNA downstream 155058 3414821 ~ 3439810 (+) True CI01000071_03414821_03439810
CI01000071_03756518_03756925.mRNA mRNA downstream 494993 3754756 ~ 3757404 (+) True CI01000071_03756518_03756925
CI01000071_03793473_03817709.mRNA mRNA downstream 532955 3792718 ~ 3819100 (+) True CI01000071_03793473_03817709
TU319744 other upstream 202860 3056084 ~ 3056531 (+) True G282080
TU319630 other upstream 430787 2804644 ~ 2804806 (+) True G281974
TU318234 other upstream 1881721 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 2337295 905217 ~ 922096 (+) True G280443
TU318001 other upstream 2456074 799775 ~ 799876 (+) True G280464

Expression Profile