RNA id: CI01000072_03487938_03491881.mRNA


Basic Information

Item Value
RNA id CI01000072_03487938_03491881.mRNA
length 2036
RNA type mRNA
GC content 0.40
exon number 6
gene id CI01000072_03487938_03491881
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 3487702 ~ 3493072 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCATAAAACAAAACGACGCGCTTAGCAACTATACACACCTCCAGGCAACCAGCTGGCGGCGTGGTGCAATGCGGTTACAAAGAACAACTGTAGTTGGCATTCTGGAGAGGTGATTGGCTAACATCTCTGTCTGGCCACGGCCACGCCCACGCTGCCAGGCGGCTCTGTATACACAATAAAGACACAATGAAACTTTTCCTTCTGCTCGATAGATGCAGACCTAAAATCTTTACACCATGCCACCAAAGAAGAAAGGGAAAGGAAACAGCAAAAAGGAAAAGCCCAAAAAGAGCACTCCAGAAAAAGATGATGGACTTTCAGAGAAGTACCGGAGAAGTGTCTTAGACGTGGCTGTTTTAAAAGAACATCTTGCCCTGAGGAGCAGTGTAGCGCATCAGGCTACAGCGGTGAGAGATGACTTGAAAAGTCAAATCAGAGATCTGGAGCAGGTGCTCAGTCAGGAGAGATCAGACATGAAGGACATCACTGCAGATCTCAACCGTCAATATAAGTCCATGGAAACAGACCTGCAGACTAAAGTGAACAGGCTTGAAGTGAGCGTGGACTTGCTTGAGACGCAGCTCGCCGAGTGTCAGGCTAAATTAAAATCGGAAAGAGAGCGGCGAGAGAAGACGGAAGCAGAAAAAGACGCCATCATTTCTGACCTCCAAAGCAAACTGGACCGCATGGAGAGTGAGTGTGAGAAGATACTGCACGGCTGTCTGGACAGTTTGCTCTCTCACCTGGCTGAGACACGGCTGCAGTGGGAAGAACAGAGCACGGTCGTTCATCAGGAAGTCAAGGACATGCTCAGTGACTTTGGGATAAACCCGCTTCACATATGAGGACATCTTCAGCTGAGCACTGTGACCAGGACCAAGACATCTGACCTTAGACAATGAAGAAATTGCATGTATATGGCACAAGCCATGCAGGGCTTTCAAACTGGGCTCCAGGGAGATATAAAACATTTTTTTTTTATTTTTTTTTTAAGAAATTGATACTTTTATTCAGCAAAGATGCATTAAATTGATCAAAAGTGACAGTAAAGACATGTATAATGTTACAAAATATTTCTATTTCAAATAAATGCTGTTTTTTTTTTTTTTTTTTTTTTTTTAACTTTCTATTCATAAAATATTCCTGAAAAATGTATTATGGTTTCCAGAAAAAAGCTGTTTTCAATGTTTCTCAAGCAATAAATCAGCATATTACAGGACCATAACCTCCATAGACACTGAGGGGGACAAGTCCCCCCCAATAATTAGAAATGGCCAAATTGTCAATATTTGAAATTCTAACAATATATTTAACGCAAATTCAAGACATGGTTACAGCCTTGTCATATTAGATTGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATAATGCTGAAAATTCACCTTTGCCATCACAGAACTAAATTACATTTTCATTGTGTTTTAGTTGTCGATACTGTTCACATTTTACATTTTGAATTATGAAATATAATGATCAATTTTACCATACCTGGTATTGGTGTAATTTGAGAAAGCATTGTGTTTAGACTTGTGTTTGGGCCTTATTCATGAAACAAGCAGAATTCATTTCTATGCAATCAATTCATCAGTGAATGTGCATGTATATCTTCCCACTGAATTGAATGGGACAATTTATGTAGAAAATGGTTTTACCTAAAATGTATGCATTTGTCCTGCCAGTGTTTCATAAATGAAGCTCTGTTTACAGCAGACACTGCAGTTCATTCTGTCACCAGCCGGTGTCTCTGTTGGCCTAATTTTCTGTCGCTCTTCTAATGGCAATTTAAAATCGTTTACATGTTTATATTGAACTCAAATCTAAAATGATTTTAATGAAATAATTAAACAAACCTTTCATGATTTAATTTTCTCCCTATAGAATGTATAGGATGTGTTTACCTGTTGTTTTCTTCTTAGTATGATTCCAAAAGTAATGCTCTAATGCCCCTGACAGACGCCAGCTGTTGATTTACAAATGCGAGATTCCCCAGGAGAACTGTCTATCTGGA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323257 lncRNA upstream 42945 3416023 ~ 3444757 (+) True G285245
TU323255 lncRNA upstream 129638 3352459 ~ 3358064 (+) True CI01000072_03355517_03379038
TU323243 lncRNA upstream 135419 3347544 ~ 3352283 (+) True G285233
TU323253 lncRNA upstream 177523 3309722 ~ 3310179 (+) True G285241
TU323218 lncRNA upstream 223324 3264102 ~ 3264378 (+) True G285220
TU323318 lncRNA downstream 2573 3495645 ~ 3496001 (+) True G285281
TU323320 lncRNA downstream 9757 3502829 ~ 3503726 (+) True G285282
TU323324 lncRNA downstream 14958 3508030 ~ 3509884 (+) True G285285
TU323337 lncRNA downstream 169888 3662960 ~ 3731187 (+) True G285296
TU323410 lncRNA downstream 368506 3861578 ~ 3864171 (+) True G285368
CI01000072_03433597_03448384.mRNA mRNA upstream 38321 3433597 ~ 3449381 (+) True CI01000072_03433597_03448384
CI01000072_03387927_03389381.mRNA mRNA upstream 98140 3387724 ~ 3389562 (+) True CI01000072_03387927_03389381
CI01000072_03355517_03379038.mRNA mRNA upstream 108276 3355344 ~ 3379426 (+) False CI01000072_03355517_03379038
CI01000072_03336220_03345300.mRNA mRNA upstream 141898 3336220 ~ 3345804 (+) True CI01000072_03336220_03345300
CI01000072_03324124_03330240.mRNA mRNA upstream 157458 3324124 ~ 3330244 (+) True CI01000072_03324124_03330240
CI01000072_03882241_03882531.mRNA mRNA downstream 388162 3881234 ~ 3883555 (+) True CI01000072_03882241_03882531
CI01000072_03895667_03895928.mRNA mRNA downstream 402595 3895667 ~ 3896388 (+) True CI01000072_03895667_03895928
CI01000072_03903428_03906320.mRNA mRNA downstream 410356 3903428 ~ 3906444 (+) False CI01000072_03903428_03906320
CI01000072_03987009_04043360.mRNA mRNA downstream 493734 3986806 ~ 4044255 (+) True CI01000072_03987009_04043360
CI01000072_04057264_04059507.mRNA mRNA downstream 564192 4057264 ~ 4061351 (+) True CI01000072_04057264_04059507
TU322715 other upstream 1502562 1981530 ~ 1985140 (+) True G284742
TU321805 other upstream 3136414 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU323494 other downstream 477185 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 676032 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 676032 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 731766 4232318 ~ 4232421 (+) False G286474
TU324694 other downstream 845647 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018103 False 840 mRNA 0.44 6 NC_007126.7 23200217 ~ 23206562 (-)