RNA id: CI01000072_03895667_03895928.mRNA



Basic Information


Item Value
RNA id CI01000072_03895667_03895928.mRNA
length 722
RNA type mRNA
GC content 0.47
exon number 1
gene id CI01000072_03895667_03895928
representative True

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 3895667 ~ 3896388 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCAACACAGCAGCAGCAGTTTGATACTCACCGCAACCGAGACTGCAGACAAGGCCTTTGCTATGCTAAAGCTAACAGAGCCTAATAACGTCTACTCCAAAATTGAGACGCTCTATTTTCCCAACAACAGTAATAAACAGCCGGGTTCATCCACAGCAATCCCACAGTCATCCAGACAGGGAAAAATGCACGCGCTCATACACGTGTCACCCCGCGGAGAGTTTCCATGGAGCGGCGACGAAATCACTCCAGCATCAAAATAAACAAAACCACTCAAAAAAGTTCGCATAGGTCTGCCCGAATGCTTTTAGAAATGATACCGAGCTCGTATGAAAGCGATGGTCCACGTTAAAATCAGCTTAGAGGTTGAAGGTTCCGGTCCATCAAACTGGGGAAAGTTGAGATGTGCCGGACTGCTGCCGTGTCTCCCGCGGGGCTGCGTCTCAAAACCTTAGTGAGCCGCCTTCATGGACAGCATTTCCTATTCAACCGAGCTCACACGCGCTCGCTCTGCTGAGCTGATTCGGAACGTACACAAAAATGTTGTATAAGTAGACATGCTCACTGGAAATTGACAAACAGTCAGTGTTTGGGTTATGGAGTGATGATGGTGATTCAAAGTTGCTTCTTCGCGAAGCCGAATGTTCACTTTAACTGTGGAAATGCGCCCAATGGGGAGTAACGTAAATTATTAGGACATTTAAAAAATAGAGTCGGTGACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU323410 lncRNA upstream 31496 3861578 ~ 3864171 (+) True G285368
TU323337 lncRNA upstream 164480 3662960 ~ 3731187 (+) True G285296
TU323324 lncRNA upstream 385783 3508030 ~ 3509884 (+) True G285285
TU323320 lncRNA upstream 391941 3502829 ~ 3503726 (+) True G285282
TU323318 lncRNA upstream 399666 3495645 ~ 3496001 (+) True G285281
TU323439 lncRNA downstream 8152 3904540 ~ 3905669 (+) False G285393
TU323451 lncRNA downstream 8152 3904540 ~ 3905669 (+) True G285393
TU323441 lncRNA downstream 8179 3904567 ~ 3905669 (+) False G285393
TU323442 lncRNA downstream 8179 3904567 ~ 3905669 (+) False G285393
TU323450 lncRNA downstream 8179 3904567 ~ 3905669 (+) True G285393
CI01000072_03882241_03882531.mRNA mRNA upstream 12112 3881234 ~ 3883555 (+) True CI01000072_03882241_03882531
CI01000072_03487938_03491881.mRNA mRNA upstream 402595 3487702 ~ 3493072 (+) True CI01000072_03487938_03491881
CI01000072_03433597_03448384.mRNA mRNA upstream 446286 3433597 ~ 3449381 (+) True CI01000072_03433597_03448384
CI01000072_03387927_03389381.mRNA mRNA upstream 506105 3387724 ~ 3389562 (+) True CI01000072_03387927_03389381
CI01000072_03355517_03379038.mRNA mRNA upstream 516241 3355344 ~ 3379426 (+) False CI01000072_03355517_03379038
CI01000072_03903428_03906320.mRNA mRNA downstream 7040 3903428 ~ 3906444 (+) False CI01000072_03903428_03906320
CI01000072_03987009_04043360.mRNA mRNA downstream 90418 3986806 ~ 4044255 (+) True CI01000072_03987009_04043360
CI01000072_04057264_04059507.mRNA mRNA downstream 160876 4057264 ~ 4061351 (+) True CI01000072_04057264_04059507
CI01000072_04095246_04107965.mRNA mRNA downstream 198858 4095246 ~ 4108670 (+) True CI01000072_04095246_04107965
CI01000072_04203719_04206013.mRNA mRNA downstream 307331 4203719 ~ 4206267 (+) True CI01000072_04203719_04206013
TU322715 other upstream 1910527 1981530 ~ 1985140 (+) True G284742
TU321805 other upstream 3544379 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU323494 other downstream 73869 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 272716 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 272716 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 328450 4232318 ~ 4232421 (+) False G286474
TU324694 other downstream 442331 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064

Expression Profile