RNA id: CI01000072_05172707_05173819.mRNA


Basic Information

Item Value
RNA id CI01000072_05172707_05173819.mRNA
length 1987
RNA type mRNA
GC content 0.47
exon number 1
gene id CI01000072_05172707_05173819
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5172679 ~ 5174665 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATGCAAGGAGCATATAGGTCACCTGTCAAGCCATAATGTTCTGCTCTGTTTAATTTATATCATATTTCCTCATGCTAGCAGGTACTTATAATCTGCTTGATCTAAGGAGAGAAAATACCTGTGCCTGTTCAGAAAGAAACTTCCTCCTAGAGATACCAGCAGATACAAACCTTGGAAAACAAGATGGAGCTTTGTAATTAATGTTAATTCAGTTGAACTCCAAACAAACAGATGCTAATGAGAGGATGACCAAGGTTAGAGGTGGGAATAGGAAAACATACGCTCATTGTATCACAGAGCAAATCTAATCTAACATACACAGCGCCCTAGAAGGACATTTCTCAACAATAACAAAGATCACAAACATTGCAGCAAATCATAAATAATGAAGCATGACTTCTAAACCTCACATAATTGCTCTTTTTCCTCTTTTGCAGATGGATGTTGTTGGACAGACCAAAGATTAGCCATTGTGTGACCTTCATAGATGGAGTTGACCATTTCATACTGCTGAAAAAAACCCTGACCCTACATGAGACCTCTCCAAGGTGATCATTTCACAAGGATTAATGGCATGTTCTCTTGTGGTCATGTCTTTGACCTCTGAGCCCTCCGAGAGGTTGAAACACTAGCCATGAAATGTGGTAGAGGCATGTGACACATCAGGCCCACCATGCTAGACCGGAGTGGGCTACAGTGTTACTGTCACTATACAATACATGAAAGCAAAACGGAAACATTCTGACTTTCTAATCTCATTTTTAAACATGGCTTGAGTTTGGACCTTAGAAACCTCAGCCAATTTTAATGATTATATAAGTCTCTGAAGCGAAGCGAAGAGACCATGTGTAACATCTCAACTTCGTGCAATGTTGACTCGAACATAGACCAGTTCTTCCAGCCGGCGCTGTATATTATCGTCATCGTCCTTGGCTTCCCCACCAACTGCATGGCCCTGTGGGCCGCGTACATGCAGGTCAGGCAGAAGAACGAGCTGGGGATCTACTTGATGAACCTCTCGGTGGCTGACCTCTTGTATATAGCCACTTTGCCACTTTGGATCGACTATTTCGTTCACCATGACAACTGGATCCACGGTCAAGTGTCCTGCAAGCTCTTCGGTTTCATCTTCTACACCAACATCTACGTCAGTATCGCCTTCCTCTGCTGCATATCTGTGGATCGTTACTTGGCGGTGGCTCATCCCTTGAAATTCGCTAAAGTCCGCAGGGTCAAAACAGCCTTATTGGTCAGCGCCGTTGTATGGATAACCGAAATAGTGGCTAACTCTGCGCCTCTCTTCCATGATGAACTTTTCAAGGACCGCTTCAACCACACCTTCTGCTTCGAGAAGTATCCCATGCAAGACTGGGTGGCTGGAATGAACCTTTACCGCATTTTCCTCGGCTTCTTGGCGCCTTGGGGTGTGATGCTGGCCGCGTACAGAGGGATCCTGAGAGCCGTGCGCGGTAACGTCTCCACCGAGCGACAGGAGAAGGCTAAAATCAAGAGGCTGGCCCTCAGTTTGATCCTCATCGTCCTCCTCTGCTTCGCTCCCTACCACGTCCTCTTGTTGTGGCGCAGCGTGCTCTTCCTCAGCAACCCCTGCGACTGTGGCGCAGAGGAGAACTTGTTTGGTGCTTATCACGTGACTCTGGCGCTCACCAGCCTCAATTGCGTGGCGGACCCAATCCTCTACTGCTTCGTCAATGAAGGGGCCCGTCATGACGTGGGCCGGGCCCTGGCCAACCTCTTGGGTCTCTTCCAGCGGGGTCAAAGCCCAGAGGCGCTTATGGGGGCATCCATCACCGTAGAGACGCCCCTGGCCATGAAGAAGCCCGATTTCTACAGTGATGTTAAAACGAATTCCTATAAAACTGACATTGAAGTACTCAAAGACGAGTGCCTTCAAATGACCATTCTCAGTGTTAAAAATGAAGTTAAATGTCAGTTGTAAATGTAAATGTCAATAGCAAAATATTAAA

Function

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04312 GPR4; G protein-coupled receptor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325583 lncRNA downstream 4952 5167483 ~ 5167727 (-) True G287213
TU325580 lncRNA downstream 10437 5161859 ~ 5162242 (-) True G287210
TU325576 lncRNA downstream 21190 5150724 ~ 5151489 (-) True G287206
TU325529 lncRNA downstream 32005 5131142 ~ 5140674 (-) True G287161
TU325371 lncRNA downstream 145587 5026121 ~ 5027092 (-) True G287011
TU325600 lncRNA upstream 93509 5268174 ~ 5268465 (-) True G287230
TU325608 lncRNA upstream 109421 5284086 ~ 5288356 (-) False G287234
TU325606 lncRNA upstream 117592 5292257 ~ 5294759 (-) True G287234
TU325659 lncRNA upstream 169588 5344253 ~ 5344555 (-) True G287273
TU325661 lncRNA upstream 201125 5375790 ~ 5376098 (-) True G287275
CI01000072_05158807_05160357.mRNA mRNA downstream 11186 5158277 ~ 5161493 (-) True CI01000072_05158807_05160357
CI01000072_05099789_05108316.mRNA mRNA downstream 62898 5099421 ~ 5109781 (-) True CI01000072_05099789_05108316
CI01000072_05053749_05071797.mRNA mRNA downstream 100882 5053644 ~ 5071797 (-) True CI01000072_05053749_05071797
CI01000072_05039232_05046122.mRNA mRNA downstream 126205 5039086 ~ 5046474 (-) True CI01000072_05039232_05046122
CI01000072_04992647_05006768.mRNA mRNA downstream 165911 4992218 ~ 5006768 (-) True CI01000072_04992647_05006768
CI01000072_05208841_05218652.mRNA mRNA upstream 34176 5208841 ~ 5218652 (-) True CI01000072_05208841_05218652
CI01000072_05268621_05275350.mRNA mRNA upstream 93888 5268553 ~ 5275643 (-) True CI01000072_05268621_05275350
CI01000072_05277286_05281467.mRNA mRNA upstream 102376 5277041 ~ 5281696 (-) True CI01000072_05277286_05281467
CI01000072_05298324_05299101.mRNA mRNA upstream 123546 5298211 ~ 5299126 (-) True CI01000072_05298324_05299101
CI01000072_05353426_05366845.mRNA mRNA upstream 178211 5352876 ~ 5366947 (-) True CI01000072_05353426_05366845
TU325381 other downstream 778456 4386145 ~ 4394223 (-) True G287021
TU324366 other downstream 1196612 3970270 ~ 3976067 (-) False G286205
TU324361 other downstream 1196677 3970270 ~ 3976002 (-) False G286205
TU325650 other upstream 206055 5380720 ~ 5382001 (-) True G287264

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018284 True 2246 mRNA 0.43 2 NC_007126.7 28822736 ~ 28860282 (-)