RNA id: TU323944


Basic Information

Item Value
RNA id TU323944
length 247
lncRNA type intronic
GC content 0.45
exon number 1
gene id G285818
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1833217 ~ 1833463 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGCACAAGTCAAATGTGTGTCAGAGCGTAATTTTTCTTGTAAGTTTAACAAAGCATCACCATTGAACAATATCAAATGATTCAACAGTTGTCACGCATGTTGTCTATGCGCTACGCCGCATGTCAATACATTTCAGATAGAGAGGGGATGTTCTGCACCAGAAGGCAGATTGCACCATATCTGTCAGAGGAATGCCTCAGTGCGGCTCAATTTATGCCACGGCTGAGGAGAAGTGAAAGAGGGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323796 lncRNA downstream 5312 1813397 ~ 1827905 (-) True G285692
TU323804 lncRNA downstream 92625 1691818 ~ 1740592 (-) False G285694
TU323803 lncRNA downstream 128294 1584297 ~ 1704923 (-) False G285694
TU323947 lncRNA upstream 2185 1835648 ~ 1845255 (-) True G285821
TU323972 lncRNA upstream 30883 1864346 ~ 1864624 (-) True G285845
TU323973 lncRNA upstream 43475 1876938 ~ 1877182 (-) True G285846
TU323975 lncRNA upstream 47136 1880599 ~ 1880821 (-) True G285848
TU323982 lncRNA upstream 59042 1892505 ~ 1892747 (-) True G285855
CI01000072_01816759_01818078.mRNA mRNA downstream 14872 1816724 ~ 1818345 (-) True CI01000072_01816759_01818078
CI01000072_01792476_01805286.mRNA mRNA downstream 27505 1792073 ~ 1805712 (-) True CI01000072_01792476_01805286
CI01000072_01596829_01610605.mRNA mRNA downstream 222357 1596783 ~ 1610860 (-) False CI01000072_01596829_01610605
CI01000072_01508008_01512181.mRNA mRNA downstream 321036 1507658 ~ 1512181 (-) True CI01000072_01508008_01512181
CI01000072_01379641_01387648.mRNA mRNA downstream 445569 1378344 ~ 1387648 (-) True CI01000072_01379641_01387648
CI01000072_01854562_01862622.mRNA mRNA upstream 20871 1854334 ~ 1862688 (-) True CI01000072_01854562_01862622
CI01000072_01901888_01919435.mRNA mRNA upstream 67461 1900924 ~ 1919473 (-) False CI01000072_01901888_01919435
CI01000072_01946903_01949124.mRNA mRNA upstream 111825 1945288 ~ 1949124 (-) True CI01000072_01946903_01949124
CI01000072_01973002_01985111.mRNA mRNA upstream 139433 1972896 ~ 1985244 (-) True CI01000072_01973002_01985111
CI01000072_01987945_01988280.mRNA mRNA upstream 153811 1987274 ~ 1988773 (-) True CI01000072_01987945_01988280
TU323812 other downstream 205322 1602289 ~ 1602443 (-) True G285697
TU323815 other downstream 205322 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323625 other downstream 478285 1335507 ~ 1354932 (-) True G285534
TU322054 other downstream 1548938 283623 ~ 283764 (-) True G284127
TU323892 other upstream 172088 2005551 ~ 2008309 (-) True G285766
TU323875 other upstream 334585 2168048 ~ 2170658 (-) True G285752
TU324139 other upstream 1160306 2993769 ~ 2999495 (-) True G286005
TU324361 other upstream 2136807 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 2136807 3970270 ~ 3976067 (-) False G286205

Expression Profile